Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00250 ATGGTAGCCTTGAAGACCATCTCTTCTCTTCCATGGACAACTAAAATGCAAAAATCACTTACTTGGTCTAAAAAAAAGAGCATAATCTTGGATGTGGCAAATGGGTTAGTCTATTTGCACTTTGGAATTAAACCTGCAATCTACCACAGAGATATCAAAACCACCAATATAGTGCTTGATGCAGGTATGAATGCAAGAGTTGCGGATTTCGGGTTAGCTAAACAAAACTTTGAAAGCAGATCTTTGATAAATACAAGAGTTGCTGGAACTCATGGGTACCTGGCACCAGAATATGCACTTTATGGCCAATTATCCGAAAAGAGTGATGTCTATAATTTTGGTGTGGTTATATTGGAAATATTGTGTGGAAGAAAAGTTCTTAATTTATCTTCATCTGGAGCACCTGCATTCTTTATCTCTGATTGGGTTTGGTCATTGCTGAAATATGTAGCTGATTCAAGGCCAACAATTTTGGATGCTTTGAAGATGTTAGAAGGGGATATTGAGATTCCACCAATTCCATAG 525 0.3752 MVALKTISSLPWTTKMQKSLTWSKKKSIILDVANGLVYLHFGIKPAIYHRDIKTTNIVLDAGMNARVADFGLAKQNFESRSLINTRVAGTHGYLAPEYALYGQLSEKSDVYNFGVVILEILCGRKVLNLSSSGAPAFFISDWVWSLLKYVADSRPTILDALKMLEGDIEIPPIP 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00250 174 PANTHER OS01G0253100 PROTEIN 17 148 IPR045271 GO:0004714|GO:0006468
Aip04g00250 174 Gene3D Transferase(Phosphotransferase) domain 1 9 169 - -
Aip04g00250 174 Pfam Protein kinase domain 16 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00250 174 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00250 174 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 17 148 - -
Aip04g00250 174 SUPERFAMILY Protein kinase-like (PK-like) 18 165 IPR011009 -
Aip04g00250 174 SMART serkin_6 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00250 174 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00250 Aip-Chr4 3042969 3043606 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00250 13 174 Receptor kinase-like Gene Family AT1G11050 59.901 2.38e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Aip04g00250 Pkinase 2.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00250 - - lja:Lj0g3v0288509.1 244.202