Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00233 ATGAATTTTTCGGTTCTAAAATCAGCAACATATTCCACAGCGGTTGTTCCAAAACCAGCTTCTCAATCTGATCTCTTTCTTCACTCTAATAACCACCCTTCTCGCCATGCCAGGGCGTTTCTTCCCAGATGCAGCTTTAATGAGATGCCGCAGAAATCAATGGCGAAGAAGACGGCTTACGAGAAGATAAGGGAGGAGCTGAAACTTGATGCAAAGCCAAAGATGAACTTGGCTTCCTTTGTGACCACGTCAATGGAGGAAGAATGTAACATACTCATGATGGAATCCTTCAACAAGAACTATGTTAACATGGACGAGTACCCTGCCACCACTCAACTTCACAATAGATGTGTGAACATGATAGCACGTTTGTTCAACGCTGAAATTGGAGAAAATGAGAACGCAATTGGAACAGGAACTGTTGGATCTTCAGAGGCCATAATGCTGGCGGGCCTTGCATTCAAGAAAAAATGGCAGAACAAGCTCAAGGCCCAAGGCAAGCCCTATCATAAGCCCAACATTGTCACTGGTGCCAATGTCCAGGTATGTTGGGAGAAATTTGCAATGTATTTCGATGTAGAGTTGAGAAAAGTGGATGTTGGAGAAGGGTATTATGTGATGGACCCTGCTAAAGCCATTGAAATGGTTGATGAGAACACTATCTGTGTGGCTGCAATCTTGGGTTCAACTTATAATGGCGAATTTGAAGATGTCAAGTTGCTTAACGACCTCTTACTACAACAAAACAAGAAAAATGGATGGGATACACCGATTCATGTTGATGCAGCAAGTGGTGGGTTTGTTGCTCCTTTTCTTTATCCAGAGCTAGAATGGGATTTCAGGCTTCCATTGGTGAAGAGCATAAATGTTAGTGGCCACAAGTATGGTCTTGTTTATGCAGGCATTGGTTGGGTTATTTGGAGAAGTCAAGAGGACTTGCCTCAAGAGCTTATCTTCAATATTAATTACCTTGGAGCAGACCAACCCACCTTTACCCTTAATTTTTCTAAAGGGTCTAGTCAGATTATTGCACAATATTATCAACTAGTTCACCTTGGCAGAGAGGGATACCAAAGAGTAATGGAAAAGTGCAAAGAAAATGCAATGGTGGTGAAACAAGGATTGGAGAAAACAGGGTGCTTTAACATACTCTCAAAGGACAATGGTGTTCCTTTGGTAGCCTTTTCTCTTAAGGACACAAGCCATGGTGACGAGTTCAAGATATCGGAGATGCTACGCCGCCTCCACGGTTGGGTTGTGCCGGCTTATCCAATGCCGTCCGGTGCGGAGCATGTCAATGTGCTCCGCGCGGTGGTTAGAGCCGAGTTTTCGCGCGAGATGGCCGAAAAACTCGTGCTGGACATAGAAAATGTGTTGCAAGAACTTGGGAAGCTTGGTCCCAAGTACACACCAAAAGTGACCAAAATTAAGAAAGACATTGCAAAGAGGAAAATCATTGTCCGAGAATCCAACAAGCATCACAAAGTCTTGGCAGCATAG 1500 0.4387 MNFSVLKSATYSTAVVPKPASQSDLFLHSNNHPSRHARAFLPRCSFNEMPQKSMAKKTAYEKIREELKLDAKPKMNLASFVTTSMEEECNILMMESFNKNYVNMDEYPATTQLHNRCVNMIARLFNAEIGENENAIGTGTVGSSEAIMLAGLAFKKKWQNKLKAQGKPYHKPNIVTGANVQVCWEKFAMYFDVELRKVDVGEGYYVMDPAKAIEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLQQNKKNGWDTPIHVDAASGGFVAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSQEDLPQELIFNINYLGADQPTFTLNFSKGSSQIIAQYYQLVHLGREGYQRVMEKCKENAMVVKQGLEKTGCFNILSKDNGVPLVAFSLKDTSHGDEFKISEMLRRLHGWVVPAYPMPSGAEHVNVLRAVVRAEFSREMAEKLVLDIENVLQELGKLGPKYTPKVTKIKKDIAKRKIIVRESNKHHKVLAA 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00233 499 Gene3D - 15 82 - -
Aip04g00233 499 PANTHER GLUTAMATE DECARBOXYLASE 15 483 IPR010107 GO:0004351|GO:0006536|GO:0030170
Aip04g00233 499 Gene3D - 83 377 IPR015421 GO:0003824
Aip04g00233 499 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 45 462 IPR010107 GO:0004351|GO:0006536|GO:0030170
Aip04g00233 499 SUPERFAMILY PLP-dependent transferases 40 462 IPR015424 -
Aip04g00233 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 50 398 IPR002129 GO:0016830|GO:0019752|GO:0030170
Aip04g00233 499 PANTHER GLUTAMATE DECARBOXYLASE 15 483 - -
Aip04g00233 499 Gene3D - 378 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00233 Aip-Chr4 2690079 2694830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00233 15 483 Calmodulin-binding Proteins AT2G02010 69.936 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00233 K01580 - gmx:100812201 744.962