Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00181 ATGCCACCTGGTTTTGAGTACAACATCGATGATCTGTACCAGGAAGCTAAGAGAAGATGGCTGAAGCCGGTGGAAGTGCTATACATTTTGCGGAATCATGACCAGTGCAAGTTCACCAATATTCCCCCTCAAAAGCCAACAGGTGGATCCTTGTTTCTATTTAATAGAAGAATCATGCGTTTCTTCCGTAAAGACGGTTATAATTGGCGGAAGAAAAGGGATGGAAAAACTGTGGGAGAAGCACATGAACGGCTTAAGATTGGAAACGTTGAAATACTAAATTGTTACTATGCACATGGAGAGGAGAACCGTAGTTTCCAGAGGAGGAGCTACTGGATACTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTACAGAGAAACAAAGGAGGGGAACTCAGGTTCTGGACCTATCCCACCATTGTCTGAAGGCTGCTCTCCTGAATTTAGTCAGAATCGAAGCTCACGTACTACGCTTGACCCAGGGACAATATCCGTGCTTGGTGATTCATGTGAACCTTCTCAGAATTTCTCCAGTACTGAGTCTATGGAAGTTACCTCTAATATCATCAGAAACAATGGAATGGATCAGTTAGATGAAACAGATGCAGTCTTGCGCCAATTGAAGCAACAGTTAAGTTTGGAAAAGGAGAACTGTGAAGAAATTTCTCCCACATACACTGAGCCTGAGATTTTACATGATTTGAACCCTCAGCATGATGAAAGAGTGATGTACAAGCATAAATCTGCAGCTTTCACTGTGCCAAATGATTATGGACAAGCCGCTTATGAATGCAATGGAAGACAAGGTGACAATGGTAAAAATTATAATCAAATATTAAACTGCGATTGCCCAGATGCAAATGAAAATGCCTTATCTTGGACAGAGGTGCTTGAGTCGTGTAAGCCTGCAAGCTTGACCAATTTACCAGAGCAACATGCATATGAGGCATATGGAAATGATAGCTCCCTACATTCTTCACGAATTGTACTGATTGACAGTCAAGAAAACAGTCAGTGGATAAACTCCAACAGTATTAATGCTGAAAACTCTGTCTTCTCTTGTCCTCAAGATGGTGGAACCAAATTTCCTCTGTATTCACCGGTTGAAGCTGAAGAACTTAGTTCTGACTATGCGACATTGTTTCATCAAATCCAAATTCCACCACCTCTGGATGCAGATTCATGCCTGACTATTTCACAGAAACAAAAATTCACAATTAGGAGAATCTTCCCAGAGTGGTGTTATGCCACAGAGACTTCAAAGGTGGTCATTATTGGGTCATTTCTCTGTCTTCCCTCAAATTCTACCTGGGCTTGTATGTTTGGTGATATTGAAGTGCCTGCTGAGATAATTCAGGATGGTGTTATTTGTTGTGAAGCTCCCCTCCACCTTCCTGGAAAGGTTACTCTCTGCGTTACTTCTGGAAATCGGGAGTCCTGCAGTGAATTTCGAGAGTTTGAGTTTCGCAATAAGACTAAAAGTTGCACTCGTTGTAACTCAATGGAAACAGAAACTGCTAGAAGCCAAGATGAGCTGTTATTACTTGTTACATTTGCACAGATGCTCCTTTCTCCTCCAACTATAAAGAATGACAACATGGAACCTGTATATCATCTTCCAGTGGAACAGAAAGCAGATGATGATTCATGGAGCCATGTGATAGAGGCTCTTCTAGTAGGCAGTGGAACTTCATCAGGTACTATTGATTGGCTTCTTGAAGAGCTGCTGAAGGAAAGGCTACAGCTGTGGCTTTCTGGCAAATCCCGGGAAATAGATGAAGCAACCGGCTGCCCTTTGTCAAAGAAAGAGCAGGGGATTATACACATGGTTGCTGGATTGGGTTATGAGTGGGCCTTGATCCCTATTCTCAGTTGTGGTGTGAATATAAATTTTCGTGACATCAGGGGGTGGACTGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCTTCACTTATTGCTGCTGGTGCATATGCTGGAGCAGTAACTGATCCAACATCTGCAGACCCAGATGGGAAAACTGCTGCCGCTATTGCTGCCAGCAATGGCCATAAGGGACTGGCCGGTTATCTTTCAGAAATTGAAGCAGAGTTAACCATCAATCGTGTCTCAAAAGAAAATATTGGATTCACAGCTGATGGGGTTTCACTGGCTGCTGTCAGAAATGCTGCTCTGGCTGCTGCTCGGATACAGGCTGCATTTCGTGCTCATTCTTTCAAAAAACGGAGGGAGAGGGAAGCTGTTGCAGCAGCCGCTGCCGCTGCTGCTAGTCTAGATGGGTATGATATCGATGCTGATGGCATTGGTAACATTCTAGAGCTTTCTCCCAGGTTAAGTCATAGCTTTGGGAGGCTTCGTGATTACAATGCAGCTGCTTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCTTAGCACTGCGCCAAAAAGTAGTGAAAATACAGGCTCATGTGAGGGGTTACCAGGTTCGGAAGCAATACAAGATAATAGTATGGGCAGTTGGAGTCTTGGAGAAGGTAGTGCTACGATGGCGGAGAAAAGGAGCTGGTCTACGAGGTTACCGACAAGACTCGATTGATGAAAATGACGATGATGATTTTCTCAAGGTGTTCAGGAAGCAGAAAGTGCATGTAGCAATTGAAAAAGCTTTTTCACGGGTGCTGTCCATGGTCCATTCTAATGGTGCCCGTCAACAATATCGCCGCATGCTTGAGATGTATCGTGAAGCTAAGGCTGAACTTGGTAGCATGAATGATGAAGCGCCATTAACGACGTCTGTAGGGGACACATCAAATATAGATGATGATGATGAACTCTTTCAAATTCCCGGGGGCTGGGAGACACTCTAG 2877 0.4387 MPPGFEYNIDDLYQEAKRRWLKPVEVLYILRNHDQCKFTNIPPQKPTGGSLFLFNRRIMRFFRKDGYNWRKKRDGKTVGEAHERLKIGNVEILNCYYAHGEENRSFQRRSYWILDPAYEHIVLVHYRETKEGNSGSGPIPPLSEGCSPEFSQNRSSRTTLDPGTISVLGDSCEPSQNFSSTESMEVTSNIIRNNGMDQLDETDAVLRQLKQQLSLEKENCEEISPTYTEPEILHDLNPQHDERVMYKHKSAAFTVPNDYGQAAYECNGRQGDNGKNYNQILNCDCPDANENALSWTEVLESCKPASLTNLPEQHAYEAYGNDSSLHSSRIVLIDSQENSQWINSNSINAENSVFSCPQDGGTKFPLYSPVEAEELSSDYATLFHQIQIPPPLDADSCLTISQKQKFTIRRIFPEWCYATETSKVVIIGSFLCLPSNSTWACMFGDIEVPAEIIQDGVICCEAPLHLPGKVTLCVTSGNRESCSEFREFEFRNKTKSCTRCNSMETETARSQDELLLLVTFAQMLLSPPTIKNDNMEPVYHLPVEQKADDDSWSHVIEALLVGSGTSSGTIDWLLEELLKERLQLWLSGKSREIDEATGCPLSKKEQGIIHMVAGLGYEWALIPILSCGVNINFRDIRGWTALHWAARFGREKMVASLIAAGAYAGAVTDPTSADPDGKTAAAIAASNGHKGLAGYLSEIEAELTINRVSKENIGFTADGVSLAAVRNAALAAARIQAAFRAHSFKKRREREAVAAAAAAAASLDGYDIDADGIGNILELSPRLSHSFGRLRDYNAAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKQYKIIVWAVGVLEKVVLRWRRKGAGLRGYRQDSIDENDDDDFLKVFRKQKVHVAIEKAFSRVLSMVHSNGARQQYRRMLEMYREAKAELGSMNDEAPLTTSVGDTSNIDDDDELFQIPGGWETL 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00181 958 Pfam IPT/TIG domain 407 481 IPR002909 -
Aip04g00181 958 SMART ANK_2a 676 705 IPR002110 GO:0005515
Aip04g00181 958 SMART ANK_2a 637 669 IPR002110 GO:0005515
Aip04g00181 958 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Aip04g00181 958 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Aip04g00181 958 Coils Coil 199 219 - -
Aip04g00181 958 SUPERFAMILY E set domains 407 491 IPR014756 -
Aip04g00181 958 ProSiteProfiles IQ motif profile. 731 757 IPR000048 GO:0005515
Aip04g00181 958 Gene3D - 793 840 - -
Aip04g00181 958 SUPERFAMILY Ankyrin repeat 607 705 IPR036770 -
Aip04g00181 958 MobiDBLite consensus disorder prediction 132 162 - -
Aip04g00181 958 Coils Coil 909 929 - -
Aip04g00181 958 SMART CG_1_2 12 130 IPR005559 GO:0003677
Aip04g00181 958 ProSiteProfiles Ankyrin repeat profile. 637 669 IPR002110 GO:0005515
Aip04g00181 958 ProSiteProfiles IQ motif profile. 793 822 IPR000048 GO:0005515
Aip04g00181 958 Gene3D Immunoglobulins 401 494 IPR013783 -
Aip04g00181 958 PANTHER CALMODULIN-BINDING PROTEIN 1 950 - -
Aip04g00181 958 Pfam IQ calmodulin-binding motif 818 837 IPR000048 GO:0005515
Aip04g00181 958 Pfam IQ calmodulin-binding motif 795 813 IPR000048 GO:0005515
Aip04g00181 958 ProSiteProfiles Ankyrin repeat region circular profile. 637 662 - -
Aip04g00181 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 844 IPR027417 -
Aip04g00181 958 Gene3D - 495 699 IPR036770 -
Aip04g00181 958 MobiDBLite consensus disorder prediction 146 162 - -
Aip04g00181 958 SMART iq_5 727 749 IPR000048 GO:0005515
Aip04g00181 958 SMART iq_5 815 837 IPR000048 GO:0005515
Aip04g00181 958 SMART iq_5 792 814 IPR000048 GO:0005515
Aip04g00181 958 Pfam Ankyrin repeats (3 copies) 614 705 IPR002110 GO:0005515
Aip04g00181 958 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 950 - -
Aip04g00181 958 ProSiteProfiles IQ motif profile. 816 840 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00181 Aip-Chr4 2043763 2052176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00181 5 951 CAMTA Transcription Factor Family AT1G67310 47.591 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Aip04g00181 CG-1 1.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00181 K21596 - gmx:100791430 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00181 04 2043763 2052176 Aip03g04976 03 134433582 134438957 PCT