Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00179 ATGAGTTTGCTCCATGTTGTTGGGTTTGGTCTAAAAGTAGGGCATCTACTTTGGGTGCCATGTTGCTTGATTGTGTCTTTCATTTACCTCAACTGGTTCAATTGCAATCTTGGAATTAATCATAACCATAATTGTAGTAACAATAACAAGTGGAAGATGGGTTTTCTTGGAGATTATGATGGAAAGGTTTGGCTCAATAATTGGTGGGAGAAGAACTTGGGGAACACTTGTAAACAATACTATTACAAGTATAAGATGTTGAGGAGATCCTGGTGGAGGAAGCTCTGGCATGCTTATGTGGTTTTTTGGATTGTGATTTCGTCCTCGAGGTTCTTGCATATGAGCTCGGAGGCTACTGAGAAGAGGAAGGAAAGTCTTGTTAGCTTGTGTGATGAAAGGGCAAGGATGCTGCAGGATCAGTTTAATGTTAGTATGAACCATATTCAGGCTATGTCCATTTTGATCTCCACTTTTCACCATGCCATGGACCCTTCTGCGATCGATCAGAAAACTTTTGCCAGGTATACGGAAAGAACTGCTTTCGAGAGGCCCCTTACGAGTGGTGTCGCATATGCTGTAAGGGTGCTCCATTCCGAAAGGGAACAATTCGAAAAGCAGCAAGGGTGGACTATTAAGAGGATGGATACCCTGGAACAAAACCCGGTTCAAGAGGATGATTTCGCCTTAGAGGCATTGGAGCCATCCCCTATTCAGGAAGAATATGCTCCTGTCATCTTTGCCCAGGAAACAATCAAACATGTAATTTCTGTTGATGTGCTTTCTGGAAAGGAAGACCAGGAAAACGTGTTGCGTGCAAGAGAGTCAGGCAAAGGAGTCTTAACTGCTCCCTTCAGGCTGCTCAAAACAAATCGTCTAGGCGTTATCCTCACATTTGCTGTATACAAGAAAGAACTTCCATCAAATGCAACCCCAGATGAAAGGATTCAAGCAACTGATGGGTATCTTGGAGGGGTCTTTGACATCGAGTCATTAGTGGAAAAATTACTTCAGCAACTTGCTAGCAAGCAGTCAGTCATTGTTAATGTTTATGATACTACAAATCATACCGATCCTATCGCCATGTATGGTTCAGATGTATTAGGTGATGAATTCTACCATGTCAGCACTCTCAACTTTGGAGATCCCTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCACCGTGGCCATGGGAGGCAATACATTCATCAGTTGGCATGCTTGTTATTGCAGTCCTTATTGGTTATATTCTCTATGCCACTGTGAATCGAATGTTCATTTCCGAGGATAATTACAATGAGCAGATGGAGCTTAAAAAACGTGCCCAGGCAGCTGATGTTGCAAAATCTCAGTTTCTCGCCACTGTTTCCCATGAGATCCGAACACCAATGAATGGTGTCTTAGGGATGTTGAATATGCTTATGGACACAGATCTGGATGTAACACAACAGGAGTATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTTGTATCCCTTATAAATGAGGTTTTGGACCAGGCAAAGATTGATTCCGGTAAGCTAGAGCTGGAGGCAGTGGTGTTTGACTTACGGGCGATTTTGGATGATGTGTTGTTACTATTTTCTGAGAAGTCTCAAGGGAAAGGAGTAGAGTTGGCAGTATATGTCTCGGATGAGGTTCCGGAACAACTCATAGGTGATCCTGGAAGGTTTAGACAAATAATTACAAATCTCATGGGCAACTCTATTAAGTTCACGGAAAAAGGGCATATCTTTGTTACCATCCATCTTGTTGAGGAGGTTGTTCATTCAATAGAAGTTGAGCCGCAATCAACCTCAAAAGATACCTTAAGTGGTTACCCGGTTGCTGATATTCGTCGGAGCTGGGAAGGATTCAAGGCTTTCAGCCAAGAGGGACCTCTTGGTTCTTTTTCTTCGCCGTCAAGCGAGCTTGTCAATCTGATTGTATCTGTTGAGGATACTGGAGTAGGTATTCCTCTCGAGGCACAGTCCCGTATATTCACTCCTTTCATGCAAGTAGATCCATCCATCTCCCGAAAACATGGGGGAACCGGGATTGGTCTAAGCATTAGTAAGTGTTTGGTTGGACGTATGAATGGAGAAATTGGGTTTGTGAGCATACCCAACATAGGTTCCACTTTCACATTTACTGCTGTCTTCACAAATGGATCTCCCAATTCAAAGGAGGGTAGAAGTCAGCCAATCAACAACCAGCCTCATCTTGCCTCCTCGGAATTCCATGGCACGAATGCCTTAGTTATCGACCCCAGACCCATTCGAGCTAAAGTGTCAAGATATCACCTCCAACGTCTTGACATTCGTGTCGAATTAGTCTCAGATTTGGATCAAGGTTTGTCCCTCATAACCAATGGGAATTCACCAATTAGTATTGTTTTCATTGAGCAGGAGGTCTGGGATAGAGATTCGAGCATTTCGTCGCACTTCGTCAACAATACTAGAAAAGTTGACCCTCCTAAGCTATTCATTCTTGTTAATTCCAATAGTTCTTTTAGAGCAAGTTCTGTAAATTCTGGTGATCCTTTTCCAGTTGTCATCACAAAACCTCTAAAAGCAAGTATGCTAGCTGTGACATTGCAAAGAGCCATGGGCGTTGGGAACAGAGGGAACACTCGAAATGTGGAGCTCCCTAGTTTATCTCTCCATCATCTTCTTCGAGGGAGAAGGATTTTAGTAGTAGACGACAACAGTGTGAACCGCACCGTGGCAGCCGGTGCCTTGAAAAAATATGGAGCTGATGTGGTTTGTATAAGCAGTGGAAAAGATGCCGTTGCCAAGCTGAATCCACCCCATCAATTCGATGCCTGTTTCATGGATATCCAAATGCCAGAAATGGATGGCTTTGAAGCTACGAGACGAATTCGAGAGTTGGAAGCATCGATGGACGGTGATGGTAATAATTCAAAGTTGCATGTTCCCATTTTGGCTATGACAGCGGACGTGATGCAGGCAACAAATGAGGAATGCCTAAAAACTGGGATGGATGGATATGTTTCAAAGCCCTTTGAAGCTGAGCAACTTTATAGAGAAGTTTCGCGGTTTTTCCCACCTTCATGA 3084 0.4358 MSLLHVVGFGLKVGHLLWVPCCLIVSFIYLNWFNCNLGINHNHNCSNNNKWKMGFLGDYDGKVWLNNWWEKNLGNTCKQYYYKYKMLRRSWWRKLWHAYVVFWIVISSSRFLHMSSEATEKRKESLVSLCDERARMLQDQFNVSMNHIQAMSILISTFHHAMDPSAIDQKTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVQEDDFALEALEPSPIQEEYAPVIFAQETIKHVISVDVLSGKEDQENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKKELPSNATPDERIQATDGYLGGVFDIESLVEKLLQQLASKQSVIVNVYDTTNHTDPIAMYGSDVLGDEFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWEAIHSSVGMLVIAVLIGYILYATVNRMFISEDNYNEQMELKKRAQAADVAKSQFLATVSHEIRTPMNGVLGMLNMLMDTDLDVTQQEYVRTAQGSGKALVSLINEVLDQAKIDSGKLELEAVVFDLRAILDDVLLLFSEKSQGKGVELAVYVSDEVPEQLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTIHLVEEVVHSIEVEPQSTSKDTLSGYPVADIRRSWEGFKAFSQEGPLGSFSSPSSELVNLIVSVEDTGVGIPLEAQSRIFTPFMQVDPSISRKHGGTGIGLSISKCLVGRMNGEIGFVSIPNIGSTFTFTAVFTNGSPNSKEGRSQPINNQPHLASSEFHGTNALVIDPRPIRAKVSRYHLQRLDIRVELVSDLDQGLSLITNGNSPISIVFIEQEVWDRDSSISSHFVNNTRKVDPPKLFILVNSNSSFRASSVNSGDPFPVVITKPLKASMLAVTLQRAMGVGNRGNTRNVELPSLSLHHLLRGRRILVVDDNSVNRTVAAGALKKYGADVVCISSGKDAVAKLNPPHQFDACFMDIQMPEMDGFEATRRIRELEASMDGDGNNSKLHVPILAMTADVMQATNEECLKTGMDGYVSKPFEAEQLYREVSRFFPPS 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00179 1027 ProSiteProfiles Histidine kinase domain profile. 457 725 IPR005467 -
Aip04g00179 1027 CDD HATPase_EvgS-ArcB-TorS-like 567 723 - -
Aip04g00179 1027 Pfam Response regulator receiver domain 899 1019 IPR001789 GO:0000160
Aip04g00179 1027 CDD HisKA 450 511 IPR003661 GO:0000155|GO:0007165
Aip04g00179 1027 Gene3D CHASE domain 167 396 IPR042240 -
Aip04g00179 1027 ProSiteProfiles Response regulatory domain profile. 898 1024 IPR001789 GO:0000160
Aip04g00179 1027 SMART CHASE_2 163 364 IPR006189 -
Aip04g00179 1027 Pfam CHASE domain 166 362 IPR006189 -
Aip04g00179 1027 CDD REC_hyHK_CKI1_RcsC-like 899 1020 - -
Aip04g00179 1027 SMART HKATPase_4 562 725 IPR003594 -
Aip04g00179 1027 CDD PRTases_typeI 846 926 IPR000836 -
Aip04g00179 1027 Gene3D - 426 513 - -
Aip04g00179 1027 SUPERFAMILY CheY-like 749 873 IPR011006 -
Aip04g00179 1027 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 562 723 IPR003594 -
Aip04g00179 1027 Gene3D - 114 166 - -
Aip04g00179 1027 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 438 516 IPR036097 GO:0000155|GO:0007165
Aip04g00179 1027 ProSiteProfiles CHASE domain profile. 163 389 IPR006189 -
Aip04g00179 1027 Gene3D - 882 1023 - -
Aip04g00179 1027 SUPERFAMILY CheY-like 894 1023 IPR011006 -
Aip04g00179 1027 Pfam His Kinase A (phospho-acceptor) domain 450 515 IPR003661 GO:0000155|GO:0007165
Aip04g00179 1027 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 504 720 IPR036890 -
Aip04g00179 1027 PRINTS Bacterial sensor protein C-terminal signature 650 664 IPR004358 GO:0016310|GO:0016772
Aip04g00179 1027 PRINTS Bacterial sensor protein C-terminal signature 668 678 IPR004358 GO:0016310|GO:0016772
Aip04g00179 1027 PRINTS Bacterial sensor protein C-terminal signature 685 703 IPR004358 GO:0016310|GO:0016772
Aip04g00179 1027 PRINTS Bacterial sensor protein C-terminal signature 709 722 IPR004358 GO:0016310|GO:0016772
Aip04g00179 1027 PANTHER HISTIDINE KINASE 3 71 1025 - -
Aip04g00179 1027 SMART HisKA_10 450 515 IPR003661 GO:0000155|GO:0007165
Aip04g00179 1027 ProSiteProfiles Response regulatory domain profile. 753 872 IPR001789 GO:0000160
Aip04g00179 1027 Gene3D - 514 725 IPR036890 -
Aip04g00179 1027 PANTHER TWO-COMPONENT HISTIDINE KINASE 71 1025 - -
Aip04g00179 1027 SMART REC_2 897 1020 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00179 Aip-Chr4 2018833 2025124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00179 1 1024 Miscellaneous Gene Families AT1G27320 64.611 0.0 1325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip04g00179 CHASE 1.2e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00179 K14489 - gmx:100801546 1549.64