Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00175 ATGGAGTGGAATGCTAAATCTCTTGGGCAATGGGACTGGGAGAACTTATACTCATTCAATACAAAACCAACTGAAAATTCCAAGTTGCAACCAACGGATTGGAGCATGGAAGCAGATGGAGAAATCAATGTTGGGCTGATATATCCGTCCGGTGGTAGTGCTTGTTCCGGTTCTGAACTGATTCATGCTTCATCTAGGAGCTCAAAATCAGCTTCCATGAATTCATCATCAAATGGGGATAGCAAAGCATCCACAACCATGTTCACTTTCGAGCGTTCTCAAGACGACTCAACTGGTAAGAAAGAATTGTCAAAGGAAGAGCCAGTTGAAAATTCTCCAGCACCAGAGCCCTCTTCTGCCTCTGGTGAACCACTGCTCACTTTAAAGCTTGGTAAACGGTTGTACTTTGAGGATGTTTGTGCAGGAAGTGATTCCAAGAAACCATCTTCCATTGATGTTCCTATTTCATCTTCGAATACTGGAAAGAAATGTAAGGCCAATAGTCAGAACCTACAACACCCAAGCTGCCAGGTTGAAGGCTGTGGTCTAGACCTCTCATCCGCTAAAGATTACCATCGCAAACACAGGGTTTGCGAAAGCCATTCCAAATCCCCTAGGGTGCTTATAGCTGGTTTTGAACGCCGATTTTGCCAGCAATGCAGCAGGTTCCACGGTCTATCAGAGTTTGATGACAAAAAGAGAAGCTGTAGACGGCGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCTCAGCCTGAAGCAGTCCAATTAAATACATCTCCTCTGTCTTCATCACCCTATGATGCGAGGCAATTAATGAATCCATTCGTTTATTCAAGAGCTGCTACGAATATAGGTTGGCAAGATATTCAAAACAGCAGGCTACCCCAGACAAAAGATTTCCTGATGAGGCCTGCGAAAGCCTTCGACAAGATACCAAGTATTGTCACTATGCTTTCTGATGATTTTAGTGACCTTGCATCCAAAGGCATGGCAACCAGTGGGAAAGAAGATCCTATTAGCTCGTCCGATCCCAACCCCACACAAGATGTCAGCCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGTCTACATATGCTATGACTCCACGTTTCCCTCTCGCTTCATCACAATATTCTCACCTCGATCAACAACCAGCCAATCCTAACATGTGTATCCCATTCTCAGATTGTGATAATAACAATCGCTTCCAAGAGTTTCAGATGTTTAGTGCTCCACCCTATGATTCTGGCTATCCTTGCAACCAGCTGGACTAA 1278 0.446 MEWNAKSLGQWDWENLYSFNTKPTENSKLQPTDWSMEADGEINVGLIYPSGGSACSGSELIHASSRSSKSASMNSSSNGDSKASTTMFTFERSQDDSTGKKELSKEEPVENSPAPEPSSASGEPLLTLKLGKRLYFEDVCAGSDSKKPSSIDVPISSSNTGKKCKANSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCESHSKSPRVLIAGFERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNTSPLSSSPYDARQLMNPFVYSRAATNIGWQDIQNSRLPQTKDFLMRPAKAFDKIPSIVTMLSDDFSDLASKGMATSGKEDPISSSDPNPTQDVSRALSLLSTNSWSTYAMTPRFPLASSQYSHLDQQPANPNMCIPFSDCDNNNRFQEFQMFSAPPYDSGYPCNQLD 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00175 425 MobiDBLite consensus disorder prediction 234 263 - -
Aip04g00175 425 Gene3D - 166 237 IPR036893 GO:0003677|GO:0005634
Aip04g00175 425 MobiDBLite consensus disorder prediction 94 109 - -
Aip04g00175 425 MobiDBLite consensus disorder prediction 142 167 - -
Aip04g00175 425 MobiDBLite consensus disorder prediction 330 351 - -
Aip04g00175 425 ProSiteProfiles Zinc finger SBP-type profile. 173 250 IPR004333 GO:0003677
Aip04g00175 425 MobiDBLite consensus disorder prediction 335 351 - -
Aip04g00175 425 MobiDBLite consensus disorder prediction 149 167 - -
Aip04g00175 425 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 423 - -
Aip04g00175 425 Pfam SBP domain 176 249 IPR004333 GO:0003677
Aip04g00175 425 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 423 IPR044817 GO:0003677
Aip04g00175 425 SUPERFAMILY SBT domain 174 255 IPR036893 GO:0003677|GO:0005634
Aip04g00175 425 MobiDBLite consensus disorder prediction 66 85 - -
Aip04g00175 425 MobiDBLite consensus disorder prediction 91 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00175 Aip-Chr4 1926649 1931862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00175 1 371 SBP-box Gene Family AT5G43270 42.037 4.51e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip04g00175 SBP 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00175 - - gmx:100781289 560.836