Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00160 ATGTCGAGTCGGAGCGGCAGGGACCGGATTAGGAGGGATTACCCTCCAAGAAATGAAGATAGGGACAGTGGTGCTATTGGGCGAGGCAACAGCAGTAGTGGCAAGAATCCCCCATCCAGGCACCTCTGGGTTGGGAACCTGTCCCACAACATTGTGGAGGACGACCTTGCTCATCATTTCTCACAGTTCGGGCCGCTGGAGACCATCGCCTTCCAGCCCGGCCGCTGCTACGCCTTCGTTAACTTCAAGAGGGACCAGGATGCTATTGATGCCATCAGAGCACTGCAAAGTTTTCCTCTTGCTGGCAACACGCTTAGGATCGAGTTTGCGAAGGCGGACAAGCCAGTGACAACAGCAAGAAATGAACATTACTCACGGGATGAACGAAGCTCCTCATTTAGGGGATCACCTCCCTCCCAAAGGGACTTTAGAGGACGCCATGGTAGCCCCCCTCAACCGGTTTATTCGGAGAAATCCAAACTGAGTGATAAAAGTCCAGAACCCAGTGAGATATTGTGGATTGGATTCCCTTCTTCTCTGAAGGTGGATGAATCCATTTTAAGAAAGTCATTTTCTCCATTTGGTGAGATAGTGAAGATTACTGCATTTCCAGGTCGTACTTATGCCTTTGTTCGCTTTCGGAGTATTGCGTCAGCACGCAGAGCAAAAGATACTCTGAACGGAAAATTATTTGGAAATCCCCGTGTACATATTTGTTTTGCCAAGAATGAAGCAGGTCCATCAAGTAGTGGGAGGAGCTCATATAATGCTCCACATTCTCCACTTTACAGGTCCAGTGGCCGTGAAGGATCAGCTGAGGACCTCAGACTGGAGAGGAGCTTCAGGGAAGACCATAACATTAGTTCACCAAACTTCCTCGCAAATTGGGATCCCGGAGATTCTGATGCTTATGATTTTAATAGGGGCTCATCATGGGTTAGTGGAAGAAACACATATGAGAAAAGAAAAGTTGGCGAGAAAGGAACTCCACCGGGATTTGGATCATCACATGAAATTCATGAATATATGAGTGTTCCTTCTAGAGAAAGACATGGATACCTGGGGGATTTGCCACAGAGGTTTCCTGAAAAGGGTGCATTCTTTGAAGATTTCCGGACGTTGCCAGAAGATGTTTACTATCTACGCGAGGCGAAAAAGCGGAAGACCAGTTCTCCTCCTCCGGACAGAGAGCTTCCGGAGTATCCTTTCTCAGAGTTAGAAAGACAGAAAGGTGTTTTCCCACGGTTATCTGGTTTCTGCCAACACGAATCTTTTAATAACGACGATGGAAATGTTGCTTACAGACAGACCCTTGATTACCCACCAAATTCACCTATGGCTTCTTTAGATAGACATGAAGGCTGGAAAACTTATGATAATTTTCAAATGGGTCATGGTGCTCTGCAATCGGATTTTGTATACAAGAAAAGATTTTCATCTGAACCTGATAATTCGTCTTTAACTGAGTGGAACTGGGAAGGAACCATTGCTAAAGGTGGAACCCCTGTTTGTCGCGCACGCTGCTTCCCAGTGGGGAAAGCCCTGGATATGATGTTACCGGAATTCTTGGATTGCACTGCCAGAACTGGTTTAGACATGCTCTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTCGTGCCTGGAAGTGATGCTGATATTGAATTCTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGTGCTGCAGTTGCTAAGTTGGATGATAAGACCACCTTATTTCTTGTACCTCCATCAGATTTCTCAGAGAAAGTGTTGAAGGTACCTGGGAAATTGAGCATATCAGGGGTTATTCTTAGACTGGAGATTCCTGGTTTAAATGATGGTCCTTTACATGTGCAAAGAGAAACAAACAATGAAAAACTGTTGCATTATAACGGGAATTCATTGTATCCAAAGCCATCATTCCCTTCAGTACGTATTCATTCCCCATCTGTTTCAGAATTCGGTAGTTCTGGAATGAGCAATACTTCTTTCCTTGGAAATAAAATTGCTCCATCAGTTCCTGCGGTTGGCTTGTCTGAGCCACACGGTGAAAGAAGCCTCGACTATCCACCTGTCCAGCAGCAGAACCCAAACTGGTTTTCTCACAATATGCAGAATTCAATCTCAACCCGAATACCACCGCAACTACCAAGTGGGTTTATCAAACCTACTTCTGAGGATGGCCGTGCCATGATTCCAAGGGCAGAGGCAGATGCAAACTCAAATCAACACAGCAGTGGAATATCTGGTATTCCTAACTGTAAGTCATCTCAGCTGGATTTGAGACCTGTGAATCCTTTGTCTGTGCCTGTGGGATCCCTGCAACCGGAACAGCTTGCACAACTAGCTGCATCTCTTCTTGAACAGCAGAGGCAATCAGGAAACTCTGCAAATGCATCTGCATCGAACGATCCTAGGCAGACCAACAGAGCTAACATGCCCGACAGCTCATCCAGGCCATCCCAAAATTACGCAGTAGAAAACTTGGTGAATCCTGAAGTCTCCACATCTCAATTTGGTCAAGCTCTACAGTTGCAAAAGCAGCAACAGGCGTCAAATGTGCCTCCATCGTCACATACGATTCAAAGAGAACCTCAAAGAGGGGCCAATGGGAATCAACAGGTGATAGATAGTAGCTTGCAGGAAGAAGCCGAAGCAGATCCGCAGAAACGTCTACAAGCAACATTACAGCTGGCTGCTGTTCTTCTTCAGCAAATCCAGCAGGGAAAAGGAAGCTAA 2757 0.4592 MSSRSGRDRIRRDYPPRNEDRDSGAIGRGNSSSGKNPPSRHLWVGNLSHNIVEDDLAHHFSQFGPLETIAFQPGRCYAFVNFKRDQDAIDAIRALQSFPLAGNTLRIEFAKADKPVTTARNEHYSRDERSSSFRGSPPSQRDFRGRHGSPPQPVYSEKSKLSDKSPEPSEILWIGFPSSLKVDESILRKSFSPFGEIVKITAFPGRTYAFVRFRSIASARRAKDTLNGKLFGNPRVHICFAKNEAGPSSSGRSSYNAPHSPLYRSSGREGSAEDLRLERSFREDHNISSPNFLANWDPGDSDAYDFNRGSSWVSGRNTYEKRKVGEKGTPPGFGSSHEIHEYMSVPSRERHGYLGDLPQRFPEKGAFFEDFRTLPEDVYYLREAKKRKTSSPPPDRELPEYPFSELERQKGVFPRLSGFCQHESFNNDDGNVAYRQTLDYPPNSPMASLDRHEGWKTYDNFQMGHGALQSDFVYKKRFSSEPDNSSLTEWNWEGTIAKGGTPVCRARCFPVGKALDMMLPEFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLEIPGLNDGPLHVQRETNNEKLLHYNGNSLYPKPSFPSVRIHSPSVSEFGSSGMSNTSFLGNKIAPSVPAVGLSEPHGERSLDYPPVQQQNPNWFSHNMQNSISTRIPPQLPSGFIKPTSEDGRAMIPRAEADANSNQHSSGISGIPNCKSSQLDLRPVNPLSVPVGSLQPEQLAQLAASLLEQQRQSGNSANASASNDPRQTNRANMPDSSSRPSQNYAVENLVNPEVSTSQFGQALQLQKQQQASNVPPSSHTIQREPQRGANGNQQVIDSSLQEEAEADPQKRLQATLQLAAVLLQQIQQGKGS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00160 918 MobiDBLite consensus disorder prediction 744 765 - -
Aip04g00160 918 Pfam SPOC domain 486 600 IPR012921 -
Aip04g00160 918 SUPERFAMILY RNA-binding domain, RBD 181 270 IPR035979 GO:0003676
Aip04g00160 918 MobiDBLite consensus disorder prediction 25 39 - -
Aip04g00160 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 235 IPR000504 GO:0003723
Aip04g00160 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 106 IPR000504 GO:0003723
Aip04g00160 918 Gene3D - 11 150 IPR012677 -
Aip04g00160 918 PANTHER RNA RECOGNITION MOTIF-CONTAINING 16 907 - -
Aip04g00160 918 CDD RRM3_Spen 42 111 - -
Aip04g00160 918 SUPERFAMILY RNA-binding domain, RBD 29 120 IPR035979 GO:0003676
Aip04g00160 918 MobiDBLite consensus disorder prediction 117 166 - -
Aip04g00160 918 PANTHER RNA-BINDING PROTEIN SPENITO 16 907 - -
Aip04g00160 918 MobiDBLite consensus disorder prediction 245 270 - -
Aip04g00160 918 MobiDBLite consensus disorder prediction 852 886 - -
Aip04g00160 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 112 IPR000504 GO:0003723
Aip04g00160 918 MobiDBLite consensus disorder prediction 1 24 - -
Aip04g00160 918 MobiDBLite consensus disorder prediction 1 41 - -
Aip04g00160 918 MobiDBLite consensus disorder prediction 852 894 - -
Aip04g00160 918 SMART rrm1_1 41 108 IPR000504 GO:0003723
Aip04g00160 918 SMART rrm1_1 171 239 IPR000504 GO:0003723
Aip04g00160 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 243 IPR000504 GO:0003723
Aip04g00160 918 MobiDBLite consensus disorder prediction 246 261 - -
Aip04g00160 918 MobiDBLite consensus disorder prediction 794 828 - -
Aip04g00160 918 Gene3D - 153 250 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00160 Aip-Chr4 1677056 1686108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00160 42 306 Eukaryotic Initiation Factors Gene Family AT4G34110 23.105 4.27e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00160 - - gmx:100811668 1144.8