Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00157 ATGAATGAACAAACAGGTGCTCAAGATCGAGCTAGGTGCTTTCCACATAATAAAATCAACCTGTCAGAGCCAGATCTCAGTGAAAATTTAGGGTTGCAGGATGAAACTCGTGATGAACTTGGTACAGAATTTCACAAGAAGTTGGATTTGAAGGATGAAGATGAAAGAGTAGCTGAAAATGAGAAGAAAGATTCAGACTTTGTAGCTGGTAGTGGAGAATATGGTGGTAAAGAATTGGGTGGTGAAGGTGGTTGTGCCCCGAAAACAGGTGAAGCACAAGGGAGTGATGATAATGATAGTTGGGATGATGATGAGGGTTATGGCTTGAATGAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTAGTAGAGTTCAGCAGCAATATCCACTGAGGCCTGATGCTAAAGATTGTGCTTTCTATCTTAAAATTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAGGTATTAATTATTCTTCTGTTCCTATTATCAATCTAG 624 0.3942 MNEQTGAQDRARCFPHNKINLSEPDLSENLGLQDETRDELGTEFHKKLDLKDEDERVAENEKKDSDFVAGSGEYGGKELGGEGGCAPKTGEAQGSDDNDSWDDDEGYGLNENVKESEVDKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSSRVQQQYPLRPDAKDCAFYLKIGTCKFGFNCKFNHPLGRRKNQVLIILLFLLSI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00157 207 Gene3D - 136 196 - -
Aip04g00157 207 MobiDBLite consensus disorder prediction 107 127 - -
Aip04g00157 207 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 167 189 IPR000571 GO:0046872
Aip04g00157 207 SMART c3hfinal6 163 190 IPR000571 GO:0046872
Aip04g00157 207 PANTHER PROTEIN PHOSPHATASE RELATED 36 197 - -
Aip04g00157 207 MobiDBLite consensus disorder prediction 50 159 - -
Aip04g00157 207 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Aip04g00157 207 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 36 197 - -
Aip04g00157 207 MobiDBLite consensus disorder prediction 1 38 - -
Aip04g00157 207 MobiDBLite consensus disorder prediction 50 68 - -
Aip04g00157 207 SUPERFAMILY CCCH zinc finger 163 192 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00157 Aip-Chr4 1667924 1669738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00157 160 192 C2H2 Transcription Factor Family AT1G29570 57.576 4.49e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip04g00157 zf-CCCH 3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00157 - - adu:110280340 257.684