Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00141 ATGGATTCCGAGGCTGGCGTTGTGGAGAAAGATCCAACTGCGCGATATGTACGGTATGATGAATTGTTGGGGAAAGGAGCGTTCAAGACTGTATATAAGGCGTTTGATGAAGTAGATGGAATAGAAGTGGCGTGGAACCAAGTCAACGTGGAGGATGTTTTGCAATCACCGCAACAATTGGAAAGATTGTACTCTGAGGTTCATTTCCTCAAGTCATTGAAACACGAGAATATCATCAAATTCTACAATTCTTGGGTCAATGAAAAGTCCCGGACTATCAACATCATCACCGAGTTGTTTACCTCTGGCAGTTTGAGGCAATACAGAAAGAAACACAAGAACATTGATATGAAAGCCATGAAGAATTGGTTGAGGCAGATTCTTCGAGGATTATGCTATCTGCATGGCCATAATCCGCCGATAATTCATAGGGATCTGAAATGTGATAACATCTTCGTCAACGGTAATACAGGACGTGTTAAGATTGGAGATCTTGGATTGGCAGTTGTGATGCAGCAGCCTCTTGCTCAGAGTGTTATAGGCACGCCGGAATTTATGGCACCGGAACTTTATGAAGAACAATATAATGAACTTATTGACATATATTCTTTTGGCATGTGTGTGTTGGAAATGGTCACCTGTGAATACCCATATAGTGAATGTAGAAATCCGGCACAGATATATAAGAAAGTTACTTCTGGTATAAAGCCTGCCGCTCTGGCTAAAGTACATGATTTGAAATTGAGAGAATTTATTGAGAAGTGTCTAGTTCCAGCAGCTATGCGACTGCCGGCGTCTGAACTGTTGAAAGACCCATTCCTTGTTGCTGAAAGCCCGAAGGAGATCAATCATGATACACTACTGCAGCTGACTAATCCGCCAATATCTGAGCCTTGTCCTATGGAGACAGACTCAAGCTCCAGGCATACTTCACATGGTTCCTCTGTGAGTAGTATTGAAGAAACTTCCTTAGTTTCAGTGTTCGATCTTCTGCAGGTGACTCAGAAAAACGAATTCCGGTTAAGAGGGGAGAAAACTGCCAACAGTACAATTTCACTTACCCTGCGAATTGCGGATGCATGCGGTCGAGCAAGGAATATCCATTTTCCGTTTTATACCCATTCTGACACGGCCAACTCAATTGCTGTGGAGATGGTTGAGCACCTGGAACTTGCGAAGGAGGATGTAACTGTGATTGCTGAGCTAATACAAAACATGATTCTGAAGCTCATGCCCAACTGGAAACCTTCCTCTCATTCCTCTCTCAACTTGTCATCTGAAAAAGATCACTTGTACAAGCCTTTGGAAGAACTTCGGAGCTGTGGAACATCAAGTTGCCAGTGGCCATCACTATCAAGTGTTTTTGATACAAAAGCAATCCAAGATGATTCTGTTCGCTTACATCATGATGGAGAAAATCATTATATACAAGAATCTGTTATGTCAGAGATTTCATCAGAGTATGGAACTACATTTGCTTTATATTCGAAGAGTGAAGAGCATGATAGCTTTAGTATGGACGGATGCTGCAAATGTTCCAATGGCTTCAATACCAATTCAGATGCCGGGTTCTGTGCTCAAGATGATAATGAACAAAAGAATGAAGTTGACCAATCAGAGAAATCAGCAGGCGTTATCAATTCACAATGCAGTGCATTCGAAAACTTTGACGTGTCAAGCATATGTTCTGTTACTCTAGCCGGCATAGATAATTCAAACGAGCTACAGCTGGAGCTTGATGCAATTGAAACGCAGTATCACCAATGTTTTCCGAGAAGCGAGCAGATACGAGCGGTGACTGGTGGTGAGCAGCAAACAAAGGTGACAGAGACGAGGCCAATGAGTGAGATGTTGCTGCTATGTGCATCTGTTCTTATGCTTGACCACAAAGAGGAAAGCGAGCCACTGCGAAGCACAGACCGACGAGATGACACTGAGGAGACGACAAAGGAACTAGCGGACGCAGAAGACTCGGTGACGAGATGGCAACCGTGCGGTATTGGCGACAGCGGCTCTGTAAGACTGAGAAGGTTGAGTTCCACTGTTGTTTTGGGAAGAATACATTGA 2067 0.434 MDSEAGVVEKDPTARYVRYDELLGKGAFKTVYKAFDEVDGIEVAWNQVNVEDVLQSPQQLERLYSEVHFLKSLKHENIIKFYNSWVNEKSRTINIITELFTSGSLRQYRKKHKNIDMKAMKNWLRQILRGLCYLHGHNPPIIHRDLKCDNIFVNGNTGRVKIGDLGLAVVMQQPLAQSVIGTPEFMAPELYEEQYNELIDIYSFGMCVLEMVTCEYPYSECRNPAQIYKKVTSGIKPAALAKVHDLKLREFIEKCLVPAAMRLPASELLKDPFLVAESPKEINHDTLLQLTNPPISEPCPMETDSSSRHTSHGSSVSSIEETSLVSVFDLLQVTQKNEFRLRGEKTANSTISLTLRIADACGRARNIHFPFYTHSDTANSIAVEMVEHLELAKEDVTVIAELIQNMILKLMPNWKPSSHSSLNLSSEKDHLYKPLEELRSCGTSSCQWPSLSSVFDTKAIQDDSVRLHHDGENHYIQESVMSEISSEYGTTFALYSKSEEHDSFSMDGCCKCSNGFNTNSDAGFCAQDDNEQKNEVDQSEKSAGVINSQCSAFENFDVSSICSVTLAGIDNSNELQLELDAIETQYHQCFPRSEQIRAVTGGEQQTKVTETRPMSEMLLLCASVLMLDHKEESEPLRSTDRRDDTEETTKELADAEDSVTRWQPCGIGDSGSVRLRRLSSTVVLGRIH 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00141 688 MobiDBLite consensus disorder prediction 298 317 - -
Aip04g00141 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Aip04g00141 688 CDD STKc_WNK 15 274 - -
Aip04g00141 688 MobiDBLite consensus disorder prediction 631 663 - -
Aip04g00141 688 SMART serkin_6 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00141 688 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 351 407 IPR024678 GO:0004674|GO:0005524
Aip04g00141 688 MobiDBLite consensus disorder prediction 631 657 - -
Aip04g00141 688 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00141 688 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 603 - -
Aip04g00141 688 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Aip04g00141 688 Gene3D - 349 436 - -
Aip04g00141 688 SUPERFAMILY Protein kinase-like (PK-like) 20 321 IPR011009 -
Aip04g00141 688 PANTHER WNK KINASE 4 603 - -
Aip04g00141 688 ProSiteProfiles Protein kinase domain profile. 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00141 688 Gene3D Transferase(Phosphotransferase) domain 1 100 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00141 Aip-Chr4 1470877 1475019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00141 4 423 MAP Kinase Kinase Kinase AT5G41990 62.736 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Aip04g00141 Pkinase 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00141 K08867 - gmx:100783717 758.829