Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00115 ATGGCCACATTGATACTGCAGAGCTTAGAACTGAAAGTGAGCTATCATAGTTTGGATACAGAGAGTTCCATTGATGGCAATGCTGCATGGTCCAGTTACTCCAACTTCGAAAGAACTGCAACTTCTAAAAAGGCTACGCTTGAGAGACCAAAGTTTTATAGAGAGCAAAAACAAAAAAAAGAAGAAATTATGTTCACGGATGCAATAGGGAATGCAGGGTACTCTCTGCTGAACGATTTAAGAGCTGAAATTGAAGTGAAGGATGGAACTTTTTCTCTCTGCTTTTGGGTTTATTTGGCCAACTCAACTACATTTCCTGCTACCATTATTCAGCAGGTTTGCTCTGATGTTTCTGAAAGTGCTCCTTTCCTCGTTATAAATGATCACAAGAGAATTAATCTTCTACCGCTTCTTCTCTTACATGAAGAAGCTCCTGATACTGGCAATATCAATTCCTTGACAGAAGTTGCATATGCAACTGTAGATTTTGAGTTTCCATTGCAAAATTGGGTTCACGTTGGATGTGAGGTTTGCCCTAATCACATGAAACTACAGATTAATGGAGAGATTGTTGGAGAAAAACCGCTGTCATCAAATAAGGAACCCAGTTCAAATGATTTGAGGAAAATAGTTTTGGCAAATATTGGTGGAGATGGAAATATTTCACACGGTTATGTGTACAATTTTCAAGTTTTCCCTTCTGTTTCATCTATTAAAGATCACCATATGAAGGATCCTCCTCTAAAGTTATCTATTGATGAGTCATCTGCCTCTGAGATTGAAGAAGAAAGTGATGGTGTTTGGAGCATTGTTGGTGGCAAGGCATCTTGTCGTAGGAACTTCTCTTTGGACGTTGTACTATTAGATGTTTTTGGCCAACCTGTTGATAAGGAGAATGAGGTTTATGCTTCACTTTTGTATGCTGACACACGGGCACCAGTGGAGAATACAATTGATGAAGAAGCACCCATTTTGGCTAGCTATGATGGAATTGAATTTCCTTCTTATGAAAGACCGAGTAAACTTTTACTGGGCCGTGCATCTTTTAAGCTGAAGATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCCTCATCAAATTCTGTGTTCCAAAATTAGGAAATTATCCTTTTTTTGAGGCACTCTCCCGTCCAATTCGATGCATCTCCAGGAGTCGTAATACCCGATTGTCTACCCTGGTGTGGAAAAGGTCACCTGGTCTTCCTAAGCATAATTTAATGCAATCTTCAGGAATGGATGATGCATCCTTTGAACATCAGCATCCTGTTTGTGAGGCAAAATCTAATCCATTAACGAAGCGATTCAGATTTGGACATGACAAGATATCCGTATCAGTGAAGGCTGACACCAACCTAGAGCAACCTGACGAGGAATGTAATTCTCATGCCCGGACTACTAATCAGGTTGAGAATGGGCTTACAACTGGCTTGTATGGCACACCTGCTAACTACGAGGCATATGAGACTCTGTCTGATTCAGAGAGTATAGGGGAGAGAAATTCACCTTCAAATAATGTGGCAAGTAGAAGATATCCAATATCTGACATGACTGTTTTTAAGTACTGCTTGGCTGGCTTGGCTGAGAGATCGCTGATGCTTAAGGAGATTGCATCCTTGGCCTCAAAGAAAGAAATTTCAGAGTTGGCCCATCATGTGTCACTTTATTCAGGATGTTCACACCATGGAAATCAAATATTAATTGCCAAAAAATTGGTGGAAGATGGAACTAATCTTTGGAAGATGATGTCTCCAAACAACAACCACGTTCCTTGGGAGAGTGCAGTGTATGAGATTGAAGAGCAATTCATGAAGATTGCTTGCAGTTCGCGATCTCTCTCACATCAGGACCTAGAGCTTCTAAGAGTTATTGCTGGATGTCAAGAGTATTTAGCCCAAGAAAACTTTGAGAAGTTATGGTGTTGGTTGTACCCTGTGGCTTACATAATTTCAAAGGAGCGGGTAAACCCTATCTGGAATTCTACATCACCTAAGTGGATAGAAGGATTCATAACTAAGGAGGAAGCAGAAGCTTCGCTTCAAGGTCCCACAGGACTTCAAGAACCAGGTACATTTGTATTGAGATTCCCCACCTCAAGAAGCTGGCCCCACCCAGATGCAGGTAGCCTAATTGTCACATATGTTGGCAATGATTACAAACTTCACCACAGGCTACTTTCGGTGGATCGTGTTTTTGGCTCTGGTGATAAAGGAATCGACATGAAGCCACTCCAAGCTATGCTAATGGAAGAACCTGAGTTGACTCGATTGGGAAGGATAATAAGAGGCCAATAG 2316 0.4111 MATLILQSLELKVSYHSLDTESSIDGNAAWSSYSNFERTATSKKATLERPKFYREQKQKKEEIMFTDAIGNAGYSLLNDLRAEIEVKDGTFSLCFWVYLANSTTFPATIIQQVCSDVSESAPFLVINDHKRINLLPLLLLHEEAPDTGNINSLTEVAYATVDFEFPLQNWVHVGCEVCPNHMKLQINGEIVGEKPLSSNKEPSSNDLRKIVLANIGGDGNISHGYVYNFQVFPSVSSIKDHHMKDPPLKLSIDESSASEIEEESDGVWSIVGGKASCRRNFSLDVVLLDVFGQPVDKENEVYASLLYADTRAPVENTIDEEAPILASYDGIEFPSYERPSKLLLGRASFKLKISQLSSKCDNRLFLIKFCVPKLGNYPFFEALSRPIRCISRSRNTRLSTLVWKRSPGLPKHNLMQSSGMDDASFEHQHPVCEAKSNPLTKRFRFGHDKISVSVKADTNLEQPDEECNSHARTTNQVENGLTTGLYGTPANYEAYETLSDSESIGERNSPSNNVASRRYPISDMTVFKYCLAGLAERSLMLKEIASLASKKEISELAHHVSLYSGCSHHGNQILIAKKLVEDGTNLWKMMSPNNNHVPWESAVYEIEEQFMKIACSSRSLSHQDLELLRVIAGCQEYLAQENFEKLWCWLYPVAYIISKERVNPIWNSTSPKWIEGFITKEEAEASLQGPTGLQEPGTFVLRFPTSRSWPHPDAGSLIVTYVGNDYKLHHRLLSVDRVFGSGDKGIDMKPLQAMLMEEPELTRLGRIIRGQ 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00115 771 Gene3D SH2 domain 659 768 IPR036860 -
Aip04g00115 771 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 71 768 - -
Aip04g00115 771 SUPERFAMILY SH2 domain 667 735 IPR036860 -
Aip04g00115 771 Gene3D - 44 238 - -
Aip04g00115 771 ProSiteProfiles Src homology 2 (SH2) domain profile. 673 771 IPR000980 -
Aip04g00115 771 SUPERFAMILY Concanavalin A-like lectins/glucanases 88 235 IPR013320 -
Aip04g00115 771 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 71 768 IPR001217 GO:0003700|GO:0006355|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00115 Aip-Chr4 1196795 1208746 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Aip04g00115 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00115 - - gmx:100803169 1111.67