Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00111 ATGGATTCATCTGAGCTGGATGGAAATGGTAACGAGGCATCCCTGCCACCACCACCCCCTGTTGTTCCACCTGATGTTGTCCCAGTTAAAGCAGAAGACGCACTTGCTGAACCTGTTAAGAAAAAGGTTTCTCGCCTTCCAATTGCCAGGCGTGGGCTGGGATCAAAAGGAATGAAGATAGCTCTTCAAACCAATCACTTCAAAGTTAATGTCACTAACAATGATGGAAATTTCTTCCATTATAGCGTTGCGTTTGCTTATGAAGATGGACGCCCTGTAGAAGGTAAGGGTTTCGGGAGAAGGATAATGGATAGGGTGCATGAGACGTATGCTTCTGAGTTAAATGGTAAGGACTTCGCATATGACGGGGAGAAAAGTCTGTTTACCATTGGTTCTCTTCCAAGCAACAAGCTTGAGTTTGAAGTTGTTCTGGAGGATGTTGTTTCGAATAGAAATAATGGTAACTGTAGCCCTGATGGTCATGGGGACAATGAAAGTGACAAAAAGAGGATGCGACGCCCGTATCGTGCGAAGAAATTTAAAGTAGAGATTAGCTATGCCGCCAAAATTCCAATGCAGGCCATTGCCAATGCCTTGCGTGGGCAGGAATCGGAGAATTTCCAAGAAGCCATCAGAGTGCTTGATATTATATTGAGGCAACATGCTGCTAAACAAGGTTGCCTCCTAGTTCGGCAATCCTTCTTCCACAATGATCCGAGGAATTTTGCTGAAGTTGGAGGTGGTGTGCTTGGCTGCAGAGGATTCCATTCAAGTTTCAGAACTACTCAGAGTGGCCTGTCTCTGAACATAGATGTCACAACTACTATGACAATCCAGCCTGGACCTGTTGTGGACTTCCTAATTGCCAATCAAAATGTGCGAGATCCATTTCAGCTTGACTGGGCAAAGGCCAAAAGGACCCTAAAAAATCTGAGGATTAAAGTAAGCCCATCCAATCAAGAGTACAAAATTACAGGTCTCAGTGAACTCCCATGCCGAGATCAGACGTTTTCTCTGAAGAAAGGTGGAAGGGATGGTGATGATGGTACTGAAGAAGTGACTGTTTATGATTATTTTGTCAATACTCGTAGGATAGATCTTCGATACTCTGCTGAGCTTCCTTGTATCAATGTTGGCAAGCCTAAACGACCGACATACTTCCCCATTGAGCTTTGTGAATTGGTGTCCTTGCAACGTTATACAAAATCGCTGTCCACGCTTCAAAGGGCTTCATTGGTAGAGAAGTCCAGGCAGAAGCCACCAGAGAGGATGAGGGTTTTATCTGATGCACTAAAAACCAGCAACTATGGTTCTGAACCTATGCTTCAAAATTGTGGAATTTCTATAAGCACTGGCTTTACTCAAGTGGATGGTCGTGTTCTGCCTTCACCAAGGTTGAAGCTTGGCAATGGTGAGGACTTAAATCCAAGGAATGGGAGATGGAATTTTAGTAATAAGAGTTTTGTGCAGCCAATAAAGATAGAACGGTGGGCTGTAGTTAACTTTTCTGCACGATGTGATGTAAGAGCTCTTGTGAGGGATATGATTAGAGTTGCAGGAACGAAAGGAATTTCAATGGAAGATCCATTTGATGTGTTTGAAGAGAGTCATCAGTTTAGGCGTTCCCCACCAATGGTTAGAGTGGAGAAGATGTTTGAAAGCATCCAGTCTAAACTTCCTGGAGTTCCTCAGTTCCTTCTATGTCTAATTCCCGAGAGGAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAAAATCTTACTGAGTATGGAATTGTTAGCCAGTGCATGTGTCCTTTAAGGGTCAATGACCAGTTTCTGACTAACGTTTTGATGAAGATAAATGCCAAGCTTGGTGGATTGAATACATTATTAGGCGTTGAACACTCTCCAGCTCTTCCAGTCGTTTCAAAAGCACCCACACTTATCCTGGGCATGGATGTTTCGCATGGCTCACCAGGGCAATCTGATATTCCTTCAATTGCAGCGGTGGTCAGCTCTAGACAATGGCCTCTTATATCGAAGTATAGGGCCTGTGTTCGTACCCAGTCTGCAAAGGTTGAAATGATAGATAACCTGTTCAAGAAAGTATCTGACAATGAGGATGAAGGAATTATAAGGGAACTTCTACTTGATTTCTATGTTAGTTCTGCGAAGAGAAAGCCAGACAATATAATTATTTTCAGGGATGGTGTTAGTGAATCACAGTTCAATCAAGTTTTGAACAAAGAGCTTGATCAAATCATTGAGGCATGTAAATTCCTTGATGAAAAGTGGGAGCCCAAGTTTGTGGTTATAGTTGCTCAGAAGAACCACCACACAAGATTCTTCCAGTCTGGTTCTCCTGACAATGTCCCACCTGGAACTGTTGTTGACAACAAAATTTGTCATCCAAGAAACTATGATTTCTACCTATGTGCACATGCCGGAATGATAGGCACTAGCAGGCCTACACACTACCATGTTCTTCATGATGAGGTTGGCTTTAGTGCTGATGAGCTACAGGAGCTTGTACATTCTCTGTCATATGTGTATCAGAGGAGCACCACTTCCATTTCTGTTGTTGCTCCAATATGCTACGCACACTTGGCTGCAACCCAGGTGGGGCACTTCCTCAAATTTGAAGACAAATCTGAGACATCTTCAAGTCATGGTGGACTGAGTGCTGCTGGAGCTGTCCCTGTCCCGCAGTTGCCGAAATTGCAGGACAGTGTTTGCAACTCAATGTTCTTCTGCTGA 2739 0.4352 MDSSELDGNGNEASLPPPPPVVPPDVVPVKAEDALAEPVKKKVSRLPIARRGLGSKGMKIALQTNHFKVNVTNNDGNFFHYSVAFAYEDGRPVEGKGFGRRIMDRVHETYASELNGKDFAYDGEKSLFTIGSLPSNKLEFEVVLEDVVSNRNNGNCSPDGHGDNESDKKRMRRPYRAKKFKVEISYAAKIPMQAIANALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPRNFAEVGGGVLGCRGFHSSFRTTQSGLSLNIDVTTTMTIQPGPVVDFLIANQNVRDPFQLDWAKAKRTLKNLRIKVSPSNQEYKITGLSELPCRDQTFSLKKGGRDGDDGTEEVTVYDYFVNTRRIDLRYSAELPCINVGKPKRPTYFPIELCELVSLQRYTKSLSTLQRASLVEKSRQKPPERMRVLSDALKTSNYGSEPMLQNCGISISTGFTQVDGRVLPSPRLKLGNGEDLNPRNGRWNFSNKSFVQPIKIERWAVVNFSARCDVRALVRDMIRVAGTKGISMEDPFDVFEESHQFRRSPPMVRVEKMFESIQSKLPGVPQFLLCLIPERKNCEIYGPWKKKNLTEYGIVSQCMCPLRVNDQFLTNVLMKINAKLGGLNTLLGVEHSPALPVVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKKVSDNEDEGIIRELLLDFYVSSAKRKPDNIIIFRDGVSESQFNQVLNKELDQIIEACKFLDEKWEPKFVVIVAQKNHHTRFFQSGSPDNVPPGTVVDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLHDEVGFSADELQELVHSLSYVYQRSTTSISVVAPICYAHLAATQVGHFLKFEDKSETSSSHGGLSAAGAVPVPQLPKLQDSVCNSMFFC 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00111 912 CDD Piwi_ago-like 440 872 IPR045246 -
Aip04g00111 912 MobiDBLite consensus disorder prediction 1 25 - -
Aip04g00111 912 Gene3D - 460 626 - -
Aip04g00111 912 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 911 - -
Aip04g00111 912 Pfam Argonaute linker 1 domain 230 277 IPR014811 -
Aip04g00111 912 ProSiteProfiles Piwi domain profile. 565 873 IPR003165 GO:0003676
Aip04g00111 912 Pfam Mid domain of argonaute 475 528 IPR032473 -
Aip04g00111 912 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 3 911 - -
Aip04g00111 912 ProSiteProfiles PAZ domain profile. 322 396 IPR003100 GO:0005515
Aip04g00111 912 Pfam Argonaute linker 2 domain 422 467 IPR032472 -
Aip04g00111 912 Pfam N-terminal domain of argonaute 59 218 IPR032474 -
Aip04g00111 912 SUPERFAMILY Ribonuclease H-like 549 871 IPR012337 -
Aip04g00111 912 SMART Piwi_a_2 565 873 IPR003165 GO:0003676
Aip04g00111 912 CDD PAZ_argonaute_like 280 395 - -
Aip04g00111 912 SUPERFAMILY PAZ domain 275 436 IPR036085 GO:0005515
Aip04g00111 912 Pfam Piwi domain 566 872 IPR003165 GO:0003676
Aip04g00111 912 Pfam PAZ domain 284 412 IPR003100 GO:0005515
Aip04g00111 912 Gene3D paz domain 274 400 - -
Aip04g00111 912 Coils Coil 738 758 - -
Aip04g00111 912 SMART DUF1785_2 228 280 IPR014811 -
Aip04g00111 912 Gene3D - 632 912 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00111 Aip-Chr4 1151865 1159887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00111 38 912 Eukaryotic Initiation Factors Gene Family AT1G48410 35.313 1.40e-164 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00111 K11593 - gmx:100820376 1573.91