Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00104 ATGGGAAACGCATGTGGAAGTGCCAAACCCGTTGCTCATGTCTCTTCTTCTAACTTTTCCGGAAGTAAGAAGCCTGTAAGTAAAACGAATAGGAGTCCAAACTCTAACATGCGAAAAGGCGATTCGAAAATATCCGAATCAAATGCTGGAAAATTGATCTCCACTAACCTTAAGTCCTTCAGCTTCAATGATCTAAAGGAGGCCACTAAGAACTTCCGGCGAGAAAATTTAATTGGAGAGGGAGGGTTCGGGCGTGTGTTCAAGGGATGGATTGATGGGAACAACTATGCTCCAACGAAACCGGGGAGTGGGATTGTAGTGGCCATTAAGAGTCTTAAGCCAGAAAGCTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTCAATTATCTCGGGCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTATTGCTTGGAGGGTAAAAACAGACTTCTTGTTTATGAGTTTATGCAGAAAGGAAGCTTGGAGAATCATTTATTCAAAAAAGGTGTTCAACCTATACCCTGGGCCACGCGGATCAATATTGCAGTTGGTGTTGCAAGAGGATTATCATTTTTACATTCCCTGGATGCAAATGTCATATTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCAGATTTTAATGCAAAACTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTATTGGAACTCAAGGGTATGCTGCACCTGAGTATGTTGCTACAGGTCATTTGACCCCAAGAAGCGATGTGTACAGCTTTGGCGTTGTCTTGTTAGAGTTATTAACAGGGAGGCGTGCACTAGAAGATGATAGGCCTGGATTTTCAGAAGAAACTCTTGTGGATTGGGCGAGGCCCTTCCTGAGTGATAACCGAAGAGTACTGAGAATCATGGATACTCGGTTGGGTGGTCAATACTCCAAGAAAGGAGCACAAGCTATGGCATCACTCGCCTTGCAATGCCTAAACACTGATCCAAAACTTAGACCACCCATGGTAGATGCTCTTGCAACACTAGAAGGACTCAATTCGTCGAATTCAATGCCGAGGACGCCACGATTAGGTACAGAGAGTAATTCAGCCAACCACTCTGGTTATTCGCACAGGTGA 1152 0.4375 MGNACGSAKPVAHVSSSNFSGSKKPVSKTNRSPNSNMRKGDSKISESNAGKLISTNLKSFSFNDLKEATKNFRRENLIGEGGFGRVFKGWIDGNNYAPTKPGSGIVVAIKSLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFKKGVQPIPWATRINIAVGVARGLSFLHSLDANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRALEDDRPGFSEETLVDWARPFLSDNRRVLRIMDTRLGGQYSKKGAQAMASLALQCLNTDPKLRPPMVDALATLEGLNSSNSMPRTPRLGTESNSANHSGYSHR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00104 383 PANTHER TYROSINE KINASE FAMILY PROTEIN 19 380 - -
Aip04g00104 383 SUPERFAMILY Protein kinase-like (PK-like) 51 362 IPR011009 -
Aip04g00104 383 CDD STKc_IRAK 78 356 - -
Aip04g00104 383 MobiDBLite consensus disorder prediction 1 45 - -
Aip04g00104 383 Gene3D Transferase(Phosphotransferase) domain 1 158 372 - -
Aip04g00104 383 MobiDBLite consensus disorder prediction 354 383 - -
Aip04g00104 383 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00104 383 MobiDBLite consensus disorder prediction 10 45 - -
Aip04g00104 383 Pfam Protein tyrosine and serine/threonine kinase 75 349 IPR001245 GO:0004672|GO:0006468
Aip04g00104 383 PANTHER OS01G0588500 PROTEIN-RELATED 19 380 - -
Aip04g00104 383 Gene3D Phosphorylase Kinase; domain 1 46 157 - -
Aip04g00104 383 SMART serkin_6 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00104 383 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00104 Aip-Chr4 1014488 1018582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00104 30 353 Glycoside Hydrolase AT3G07070 48.328 1.32e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aip04g00104 PK_Tyr_Ser-Thr 9.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00104 - - gmx:100800654 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g00104 04 1014488 1018582 Aip07g00559 07 5083760 5087130 PCT