Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00103 ATGAGTAGCATGACGAACATGGGTGATGGTCGAAAAGTACCCAAAAGTCGTCGGTCACCATCATCAGTTGAGGAGCCTACGACGGAAGGAGAAGGTCATTTCAAGAAAGGCCCTTGGACATCAATAGAGGATGCAATTTTAGTAGACTACGTTACGAAGCATGGAGAGGGGAATTGGAACGCTGTTCAAAGGAATTCGGGACTTGCTCGATGCGGTAAAAGCTGTCGATTACGATGGGCAAATCATTTGAGACCAGATTTGAAAAAGGGAGCATTCACCGAAGAAGAAGAGCGCCGGATCATTGAGCTTCATGCTAAGATGGGAAACAAATGGGCACGGATGGCTGCAGAGCTGCCTGGGCGTACGGACAATGAGATAAAGAACTATTGGAACACAAGAATTAAAAGAATGCAGCGGTCTGGTTTACCAATCTACCCTCCTGACATATGCTTGCGGGTGATGCATGGAAATCAAGAAAGTCAAAATGTTGGCAGGTTGACAGACGGAGTCAACCAGCATGACGATCTTTCACAAACAGACACGTTGAATATACCGGAGTTAGATTTCAAACATGTTAAGATCCCCGAGGATCCATCAATTTTTGACATGCCTGAAAACAGCATGTTTGAACAGAGTTCAGATTCATCCTATGGTTACAACATGTTTCCTATCATGCATCCTGCGAAGCGCCTTCGGGAATCAGCAGAAATAATGCAGTATGCACCGGTATATGAAGAAGATTACATGTCTGATGAAATTACCAACCAGTTTCATGGCGATCCCTTAAATGGCAATACTTGTTGTTCTTCTTCATCTTCTATGCCTCTATCCGGAGGCATGAAGTTGGAGCTCCCTTCACTCCAATACTTAGAGACTCAACAAGGCATTTGGGACACACCTGCTTCCCCACTTCCTTCACTTGAGTCTGTTGATACCTTGAGCAGCGGTTTGTTGGAACCAATAATGTATCAGTCAACAAAGCATTTTCAAGTGCAAGAAACACCAGATGAAGCAGTCAAGTGTAAGCCGGAATGGGATGAATCAGGGGAGCCGTATTCCCCCTTGGCTCAATCTTCTGCTTCCGTTCTAACCATGTGCTCACCGGACGGACCTCAATGGGTTGAAACTATTCAGGATCATAATATAAAGCACGAACTAGGCACAGAGTTCCCAACTTACTGTTCTGGGAAGGATGAAAAAAACATGAATCAAATACACGTGACAAGGCCCGATGCTTTACTTGACTTGGCTTGGTTTGAGAATAGCGTCGTCAATTGCGACGGCGATAAGTCTTTTAGAAAAGATGCCTTCAACACATTTTTTGGTTAG 1329 0.4454 MSSMTNMGDGRKVPKSRRSPSSVEEPTTEGEGHFKKGPWTSIEDAILVDYVTKHGEGNWNAVQRNSGLARCGKSCRLRWANHLRPDLKKGAFTEEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRSGLPIYPPDICLRVMHGNQESQNVGRLTDGVNQHDDLSQTDTLNIPELDFKHVKIPEDPSIFDMPENSMFEQSSDSSYGYNMFPIMHPAKRLRESAEIMQYAPVYEEDYMSDEITNQFHGDPLNGNTCCSSSSSMPLSGGMKLELPSLQYLETQQGIWDTPASPLPSLESVDTLSSGLLEPIMYQSTKHFQVQETPDEAVKCKPEWDESGEPYSPLAQSSASVLTMCSPDGPQWVETIQDHNIKHELGTEFPTYCSGKDEKNMNQIHVTRPDALLDLAWFENSVVNCDGDKSFRKDAFNTFFG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00103 442 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 28 436 - -
Aip04g00103 442 MobiDBLite consensus disorder prediction 1 37 - -
Aip04g00103 442 Pfam Myb-like DNA-binding domain 89 132 IPR001005 -
Aip04g00103 442 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Aip04g00103 442 SUPERFAMILY Homeodomain-like 34 130 IPR009057 -
Aip04g00103 442 MobiDBLite consensus disorder prediction 11 37 - -
Aip04g00103 442 Gene3D - 91 163 - -
Aip04g00103 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Aip04g00103 442 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 28 436 - -
Aip04g00103 442 Gene3D - 35 88 - -
Aip04g00103 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 83 IPR017930 -
Aip04g00103 442 CDD SANT 38 83 IPR001005 -
Aip04g00103 442 SMART sant 35 85 IPR001005 -
Aip04g00103 442 SMART sant 88 136 IPR001005 -
Aip04g00103 442 CDD SANT 103 132 IPR001005 -
Aip04g00103 442 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Aip04g00103 442 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00103 Aip-Chr4 1008452 1011290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00103 34 338 MYB Transcription Factor Family AT2G26960 41.908 4.82e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip04g00103 Myb_DNA-binding 9.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00103 K09422 - gmx:100800658 481.87