Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00102 ATGAGTACCATGACGAATAAGTGTGATGGTCGGAAAGTCTCCAAGGTTCGCCGCTCATCCTCATCGGTTGAAGAGGATAGTGGTGAAAGTAACATTGGAGGAGAAGGTCATTTAAAGAAAGGTCCTTGGACCTCAGCAGAGGATGCAATTTTAGTAGATTATGTCAAGAAGAATGGAGAAGGGAATTGGAATGCAGTTCAAAGGCATTCAGGACTTGCCAGATGCGGAAAAAGTTGTCGTTTACGGTGGGCAAATCATTTGAGACCAGATTTAAGAAAGGGCGCATTCACCGAAGAAGAAGAGCGCCGGATCATTGAGCTTCATGCTAAGATGGGAAACAAATGGGCACGGATGGCTGCAGAGTTGCCTGGGCGTACAGACAATGAGATAAAGAACTATTGGAACACGAGAATTAAAAGAATGCAGCGAGCTGGTCTGCCAATCTACCCTCCTGATGTATGCCTGCGGGTGATGCATGGCAATCAAGAAAGTGTAAATGTTGGTACCTTGAGAGATGAAGCCAACCAGCATGATGATCTCTCACAGACGGATACTCTGGATATACCGGAGTTAGATTTCAAACTAGTCAAAGTCTGTCCGGGTTTATCTTATGGACCATCAATTTGTGACATACCTGAAAGTAGCATGGTTGAAATGAGTTCGGACTCGTCCCATGGTTACAATCACATGTTTCCTGTGATGCCTCCTTCGAAACGCCTTCGAGAATCAGACATGCAATATGGATATTTGGACAGTTGTATCAGTGATACTGTCCCAATATTTGAACAGTATGGTGATTACACGTGTGATAAAATTTCCGACCATACTCAATTGTCTTCTCCATGTGATCCTATTCTAAACACCAGCGATCAGTTTCATGGTGATGACACATATGGTAGCCATGCAACCTTAAATGGCAATACTTCTTCTTCTGTGCCCCTACCCGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTTTGAAACTCAACACGGTATCTGGGGCACACCTGCTTCCCCACTTCCCTCACTTGAGTCCGTTGACACGATGATCCAGTCTCCGCCGGCCAAGCCGTCTCCTTCGGATCCTGTTTCTCCAGAGAGGAGCGGTTTGCTGGAAGCAATAATCTACCAGCCGAAGCAGTTACAAGTGGCGAATAACAATTCACTTCAAGCAACACCCAATGATTGTGTTCGCAAAGAAGTTAAGATTTCAACCATGAAGTCTAAGCCAGAATGCGATGAACAAGGCGGGCCGTATTTCCCCTTAGATCAGTCTGCTGCTTCAGTTGCAACCAATTATACTTCCATTAGCATGTGCTTGGTGGATGCACCCCAATCAGTTGAAACTATTCAGGATCATAATATTAAGCAAGAACTAGGCACACAGTACCCAGCTTATGTTTCTGGGAAGAAAGAAAACTGGAATCAAATAGACTTCACACGGCCCGATGCTTTACTCGACTTGGGTTGGTATGGGAGTGGCATCGATTGCGACGATTATGATGGCGATCGGTTTCTTTTTAAAGATGCTTTCAGCCCATTTCTTGGTCAAGATCCGGATGGTCCCTTATGTTCTCCATTCAGTGCCACCCTAGCCATGATTGATTTGATTGGGAATGCTAGTATTATAGCTCATAACTCGCTATTAGGTGAAAGCTTGCATTTGGAACTATTGTATTATGCTGAATGCTGTCCCCTCCATCAACAACACCATCACCACCCTACATTGCCACCAACCACAAAAACATTAGAACCATCACACCGCACCACACCGTGA 1782 0.4506 MSTMTNKCDGRKVSKVRRSSSSVEEDSGESNIGGEGHLKKGPWTSAEDAILVDYVKKNGEGNWNAVQRHSGLARCGKSCRLRWANHLRPDLRKGAFTEEEERRIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPDVCLRVMHGNQESVNVGTLRDEANQHDDLSQTDTLDIPELDFKLVKVCPGLSYGPSICDIPESSMVEMSSDSSHGYNHMFPVMPPSKRLRESDMQYGYLDSCISDTVPIFEQYGDYTCDKISDHTQLSSPCDPILNTSDQFHGDDTYGSHATLNGNTSSSVPLPGAMKLELPSLQYFETQHGIWGTPASPLPSLESVDTMIQSPPAKPSPSDPVSPERSGLLEAIIYQPKQLQVANNNSLQATPNDCVRKEVKISTMKSKPECDEQGGPYFPLDQSAASVATNYTSISMCLVDAPQSVETIQDHNIKQELGTQYPAYVSGKKENWNQIDFTRPDALLDLGWYGSGIDCDDYDGDRFLFKDAFSPFLGQDPDGPLCSPFSATLAMIDLIGNASIIAHNSLLGESLHLELLYYAECCPLHQQHHHHPTLPPTTKTLEPSHRTTP 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00102 593 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 520 - -
Aip04g00102 593 Gene3D - 39 92 - -
Aip04g00102 593 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Aip04g00102 593 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Aip04g00102 593 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Aip04g00102 593 MobiDBLite consensus disorder prediction 575 593 - -
Aip04g00102 593 CDD SANT 42 87 IPR001005 -
Aip04g00102 593 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 520 - -
Aip04g00102 593 MobiDBLite consensus disorder prediction 1 41 - -
Aip04g00102 593 SMART sant 92 140 IPR001005 -
Aip04g00102 593 SMART sant 39 89 IPR001005 -
Aip04g00102 593 MobiDBLite consensus disorder prediction 347 368 - -
Aip04g00102 593 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Aip04g00102 593 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Aip04g00102 593 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Aip04g00102 593 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 87 IPR017930 -
Aip04g00102 593 CDD SANT 107 136 IPR001005 -
Aip04g00102 593 Gene3D - 95 166 - -
Aip04g00102 593 MobiDBLite consensus disorder prediction 10 24 - -
Aip04g00102 593 MobiDBLite consensus disorder prediction 573 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00102 Aip-Chr4 996974 1000843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00102 35 520 MYB Transcription Factor Family AT5G06100 39.880 6.88e-91 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip04g00102 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00102 K09422 - gmx:100800658 637.876