Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00086 ATGAGCTTTCAGGATATCGAGGCCGGCCGGCCGTTCGCTCCCCGCCGAGGCCACATCAACGGCAAGCAAGATCCCACGCAGGCGGTGGCTGCCGGAATTTTCCAGATCAACACCGCGGTCTCCACCTTCCAGAGGCTTGTCAACACCCTAGGAACCCCCAAAGACACCCCCGAGCTCCGCGAGAAGCTGCACAAGACAAGGCTGCACATTGGACAATTGGTGAAGGACACGTCAGCGAAGCTTAAACAAGCTAGTGAAATTGATCACCAATCTAATATCAATGCAAACAAGAAGATAGCAGATGCTAAACTCGCGAAAGATTTTCAGGCCGTGTTGAAAGAATTTCAGAAGGCACAGCGACTTGCGGCAGAGAGGGAAACAGCTTACACCCCATTTGTTCCACAAGCAGCTCCATCCAGCTATACACCTAATGAAGCAGATGCTAATTCTGGTAAGACTCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTCTTGTTTTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAAGAAAGAGAGCAAGGCATTCAAGAAATTCAGCACCAAATTGGTGAAGTAAATGAAATTTTTAAAGATCTTGCTGTGCTTGTGCATGAACAGGGAGCTATGATTGATGATATTGGGTCCAACATTGAGCATTCCCATGCTGCAACTGCACAAGCAAGATCGCAACTTGCTAAAGCTTCAAAGACTCAAAGATCAAATTCTTCTTTGACATGCTTGCTTTTGGTGATATTTGGAATTGTGCTTCTAATCGTCATTGTTGTTCTGGCTGCTTAG 819 0.4676 MSFQDIEAGRPFAPRRGHINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHQSNINANKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAAPSSYTPNEADANSGKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHAATAQARSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIVVLAA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00086 272 Gene3D - 20 133 - -
Aip04g00086 272 Gene3D - 173 272 - -
Aip04g00086 272 PANTHER SYNTAXIN 2 271 IPR045242 -
Aip04g00086 272 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Aip04g00086 272 Pfam SNARE domain 216 267 IPR000727 -
Aip04g00086 272 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aip04g00086 272 SMART SynN_4 15 127 IPR006011 GO:0016020
Aip04g00086 272 MobiDBLite consensus disorder prediction 1 23 - -
Aip04g00086 272 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 271 - -
Aip04g00086 272 SUPERFAMILY t-snare proteins 23 234 IPR010989 GO:0016020|GO:0016192
Aip04g00086 272 CDD SynN 23 145 IPR006011 GO:0016020
Aip04g00086 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Aip04g00086 272 SMART tSNARE_6 174 241 IPR000727 -
Aip04g00086 272 CDD SNARE_Qa 182 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00086 Aip-Chr4 812525 815510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00086 1 260 SNARE and Associated Proteins AT5G46860 77.395 3.32e-145 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00086 - K08488 gmx:547656 414.075