Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00073 ATGATATCTGAGATGAGGCCCAGTCAATCTCCACCGCCCAACGCCATCAACAACCATCACCACCACCAAATCAACAACAACAACAGCAGGGACCGCCGCCGCCGCAAGGACCTCACCCTGCCGCTTCCGCAGCGGGACACCAACCTCGCCGTGCCCCTCCCACTCCCTCCTACCTCCGCCCCCAGCTCCGGACCTAGCGGCCACCAGATCATCCCCTTCTCCGAGCTGGAGCGCCTGAATCGCATCGGGAGCGGCAGCGGCGGCACCGTCTACAAGGTCCTCCACCGCACGACGAACCGCGTTTATGCCCTGAAGGTGATCTACGGTCACCACGAGGATTCGGTGCGTCGGCAGATCCACCGCGAGATCCAGATCCTGCGGGATGTGGACGATCAGAACGTGGTGAAGTGCCACGACATGTACGACCACAACGGTGAGATCCAGGTGCTTCTGGAGTTCATGGACGAAGGCTCCTTGGAAGGGAAACACATCCCTCAGGAGAATCACCTGGCGGATCTGGCTCGCCAGATCTTGAGGGGTCTGGCCTACCTGCACCGCCGCCACATCGTGCACCGCGACATCAAGCCGTCGAACCTGCTGGTCAACTCACGGAGGCAGGTGAAGATCGCTGACTTTGGCGTTGGGAGGATCCTGAACCAGACGATGGATCCCTGCAACTCGTCGGTGGGGACGATCGCGTACATGTCACCGGAGAGGATCAACACGGACATCAATGACGGACAGTACGACGCCTACGCCGGAGACATATGGAGCCTGGGGGTGAGCATTTTGGAGTTCTACATGGGGAGGTTCCCCTTCGCGGTTGGGAGGCAGGGGGACTGGGCCAGCTTGATGTGCGCGATTTGTATGTCTCAGCCACCGGAGGCGCCGCACACGGCGTCGCCTGATTTTAGGGATTTCGTGTCGCGGTGTCTGCAGAGGGATCCTTCTAGAAGGTGGACTGCTTCGAGGCTGCTCTCACACCCCTTCATTACGCATGGCGTCCCTCAGCAGACTCAGATTTCTCACAATCTCCATCAGCTGCTCCCTCCTCCCCCCAGACCCCTCCCTTCCTAG 1077 0.6035 MISEMRPSQSPPPNAINNHHHHQINNNNSRDRRRRKDLTLPLPQRDTNLAVPLPLPPTSAPSSGPSGHQIIPFSELERLNRIGSGSGGTVYKVLHRTTNRVYALKVIYGHHEDSVRRQIHREIQILRDVDDQNVVKCHDMYDHNGEIQVLLEFMDEGSLEGKHIPQENHLADLARQILRGLAYLHRRHIVHRDIKPSNLLVNSRRQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPHTASPDFRDFVSRCLQRDPSRRWTASRLLSHPFITHGVPQQTQISHNLHQLLPPPPRPLPS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00073 358 MobiDBLite consensus disorder prediction 1 67 - -
Aip04g00073 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Aip04g00073 358 SMART serkin_6 76 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00073 358 ProSiteProfiles Protein kinase domain profile. 76 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00073 358 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 30 352 - -
Aip04g00073 358 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 30 352 - -
Aip04g00073 358 CDD PKc_MAPKK_plant_like 74 333 - -
Aip04g00073 358 Pfam Protein kinase domain 77 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00073 358 Gene3D Phosphorylase Kinase; domain 1 63 155 - -
Aip04g00073 358 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Aip04g00073 358 SUPERFAMILY Protein kinase-like (PK-like) 73 353 IPR011009 -
Aip04g00073 358 Gene3D Transferase(Phosphotransferase) domain 1 157 347 - -
Aip04g00073 358 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00073 Aip-Chr4 690553 692229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00073 5 347 MAP Kinase Kinase Gene Family AT1G51660 68.056 3.53e-167 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Aip04g00073 Pkinase 1.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00073 K13413 - gmx:100818488 544.658