Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00072 ATGGCTATTGGCAAAGAAACGATGCAACAACAACACAAGAAAGAAGAGGAGGAATTCATCTTCAAGTCCAGCCTTCCAGACATCTACATCCCCAACCACCTTCCCCTCCATTCCTACATCTTCCAGAACCTTCCGGAGTTCGCCACGCATCCCTGCCTCATCAACGCCCCAACCGGACAAGTTTTCACCTACTCCGACGTCGAGCTCAAGGCCAGAAGAGTGGCCTCAGGCCTCCACAAACACGGAATCCGCCAAGGTGACGTCATCATGATCCTGCTCCCAAACTGCCCTCAATTCGTGTTCTCCTTCCTGGGCGCATCGTTCCGCGGCGCCATCGCCACCGCCGCCAACCCGTTCTTCACGGGCGCCGAGATAGCCAAGCAGGCCAAGGCCTCCAACGCCAGGCTGCTGGTGACGCAGTCCAGTTACTACGAGAAGGTGAAGGACCTCCATGGCCAGCTCATCCTGGTGTTCGTGGACACACCCCCGGAGGGGCACCTACATTTCTCGGAGCTGGAAGAGGCCGAGGAGGGAGACATCCCGGAGGTGAAGATCAGCCCGGAGGACGTGGTGGCGCTGCCGTACTCGTCGGGAACAACGGGACTGCCGAAAGGTGTGATGCTGAGTCACAGGGGGTTGGTGACGAGCGTGGGGCAGCAAGTGGACGGAGAGAACCCAAACCTTTACTATCACAGCGAGGATGTGATCATGTGCGTGCTCCCCATGTTCCACATATACTCCCTCAACTCCGTGCTGCTCTGCGGCCTCAGGGCCAAGGCGGCCATCGTCTTGATGCCCAAATTCGAGATCACTGCCTTCCTCGCCTTGGTGCAGAAGCATCGGGTCACCATATGCCCCGTCGTGCCCCCCATCATTCTCGCCATTGCAAAGTGCCCGGATCTCCACAACTACGATCTTTCTTCCATCCGAGTCCTTAAATCCGGCGGCGCTCCCCTCGCCAAGGACCTTGAAGACACCGTCCGCCTCAAATTCCCCAATGCCAAGCTTGGACAGGGATATGGGATGACAGAGGCTGGTCCAGTATTAACAATGTGCTTAACATTCGCGAAAGAAGCCATAGATGGAAAACCAGGTGCATGTGGCACCGTCGTCAGAAACGCTGAGTTGAAGATTGTTGATCCTGAAACCGAAAAATCTCTCCCGAGAAATCAACCGGGTGAAATTTGTATTAGGGGCCACCAGATCATGAAAGGTTATCTAAACGATCCAGAGGCAACAGAGAGAACAATAGACAAGGATGGGTGGTTGCACACGGGTGACATCGGTTACATCGACGATGATGATGAGCTGTTCCATCCTAAAATTTCTGATGTTGCTGTAGTCCCGATGAAAGATGAAGCGGCCGGTGAGGTGCCAGTTGCATTTGTAGTGAGAGCAAATGGTCACAGTGACACAACTGAGGATGAGATTAAGCAATTCGTTTCCAAACAGGTGGTGTTTTACAAGAGAATTAACCGAGTATTCTTCGTTGATGCCATTCCCAAGTCACCATCCGGCAAAATATTACGAAAGGATCTAAGGGCAAGGCTCGCACTACCTCTTCCCAATTGA 1572 0.5363 MAIGKETMQQQHKKEEEEFIFKSSLPDIYIPNHLPLHSYIFQNLPEFATHPCLINAPTGQVFTYSDVELKARRVASGLHKHGIRQGDVIMILLPNCPQFVFSFLGASFRGAIATAANPFFTGAEIAKQAKASNARLLVTQSSYYEKVKDLHGQLILVFVDTPPEGHLHFSELEEAEEGDIPEVKISPEDVVALPYSSGTTGLPKGVMLSHRGLVTSVGQQVDGENPNLYYHSEDVIMCVLPMFHIYSLNSVLLCGLRAKAAIVLMPKFEITAFLALVQKHRVTICPVVPPIILAIAKCPDLHNYDLSSIRVLKSGGAPLAKDLEDTVRLKFPNAKLGQGYGMTEAGPVLTMCLTFAKEAIDGKPGACGTVVRNAELKIVDPETEKSLPRNQPGEICIRGHQIMKGYLNDPEATERTIDKDGWLHTGDIGYIDDDDELFHPKISDVAVVPMKDEAAGEVPVAFVVRANGHSDTTEDEIKQFVSKQVVFYKRINRVFFVDAIPKSPSGKILRKDLRARLALPLPN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00072 523 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 438 - -
Aip04g00072 523 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 438 518 - -
Aip04g00072 523 Pfam AMP-binding enzyme 48 437 IPR000873 -
Aip04g00072 523 Gene3D - 438 518 IPR045851 -
Aip04g00072 523 SUPERFAMILY Acetyl-CoA synthetase-like 22 517 - -
Aip04g00072 523 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Aip04g00072 523 Gene3D - 13 437 IPR042099 -
Aip04g00072 523 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 14 438 - -
Aip04g00072 523 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 438 518 - -
Aip04g00072 523 CDD 4CL 30 513 - -
Aip04g00072 523 Pfam AMP-binding enzyme C-terminal domain 439 507 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00072 Aip-Chr4 683936 687202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00072 6 485 Monolignol Biosynthesis Gene Families AT1G51680 64.865 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00072 K01904 - gmx:100819192 794.267