Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00062 ATGAAACATCCGGCGGAGGCTGCACCGGAGGAAAACTGCTCTGCCAAGCCAGCTGTCAAGCAGGGTGAGGGTCTCCGCCAGTACTACTCTCTCCATATCCATGAGCTACAGCTCCTTCTCCGCCAGAAGACGCACAACCTCAACCGTCTGGAGGCTCAGCGCAACGAGCTCAATTCTAGAGTGAGGATGCTCCGGGAGGAACTGCAGCTTCTCCAGGAGCCCGGATCGTATGTCGGTGAAGTTGTCAAAGTTATGGGAAAGAATAAAGTCCTAGTCAAGGTTCATCCAGAAGGAAAGTATGTTGTAGACATTGATAAAAATATTGACATTACAAAGATTACTCCATCCACAAGAGTTGCCCTTCGTAATGACAGTTATGTCCTTCATTTAGTATTACCGAGCAAAGTTGATCCGTTGGTCAATCTGATGAAAGTTGAGAAAGTTCCCGATTCTACCTATGACATGATTGGTGGCTTAGACCAGCAAATCAAGGAGATTAAAGAGGTCATTGAGCTGCCAATTAAACATCCTGAACTGTTTGAAAGTCTTGGAATAGCTCAACCTAAGGGTGTTCTACTCTATGGGCCTCCTGGTACTGGAAAAACATTGTTGGCTAGGGCAGTGGCGCATCATACTGACTGTACCTTCATCAGGGTATCCGGGTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCCAGAATGGTCAGGGAACTTTTTGTTATGGCCAGGGAGCATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGAATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTGCAGCGCACTATGCTGGAACTTCTCAACCAGCTAGATGGATTTGAAGCTTCAAATAAAATCAAGGTTTTGATGGCCACAAACCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGAATTGACAGGAAGATTGAATTTCCAAACCCAAATGAGGAGTCTCGGCTAGATATTCTGAAAATCCATTCAAGAAGAATGAACTTAATGCGTGGCATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGTGCAGAGCTTAAGGCTGTGTGCACAGAAGCTGGAATGTTTGCTTTGAGGGAGAGGAGAGTACATGTGACACAGGAGGACTTTGAGATGGCTGTGGCCAAGTTTCAAACACTGCACTCACTCACTCAAGTGACTCAACTCTTCCCTTCCTTGTCTCTAGGGTTTCCCTCTGCAATTTCAGCTCTTCTGGGTCTTCTCATGTGCCACATTCATCTTATCAAGCTTCCTAACTCCTTAGGTTTTGATCTAAAGGATATGGAAGACTGGGTTCTGCTGGAATAG 1365 0.4542 MKHPAEAAPEENCSAKPAVKQGEGLRQYYSLHIHELQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKFQTLHSLTQVTQLFPSLSLGFPSAISALLGLLMCHIHLIKLPNSLGFDLKDMEDWVLLE 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00062 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 398 IPR027417 -
Aip04g00062 454 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 35 395 IPR005937 GO:0005737|GO:0030163|GO:0036402
Aip04g00062 454 Pfam ATPase family associated with various cellular activities (AAA) 191 324 IPR003959 GO:0005524|GO:0016887
Aip04g00062 454 SMART AAA_5 187 327 IPR003593 -
Aip04g00062 454 ProSitePatterns AAA-protein family signature. 295 313 IPR003960 GO:0005524|GO:0016887
Aip04g00062 454 Gene3D - 330 405 - -
Aip04g00062 454 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 17 399 - -
Aip04g00062 454 Coils Coil 33 67 - -
Aip04g00062 454 Gene3D - 144 325 IPR027417 -
Aip04g00062 454 Pfam Proteasomal ATPase OB C-terminal domain 78 133 IPR032501 -
Aip04g00062 454 PANTHER BNAA02G04630D PROTEIN 17 399 IPR035261 GO:0036402
Aip04g00062 454 Gene3D - 39 143 IPR012340 -
Aip04g00062 454 Pfam AAA+ lid domain 348 390 IPR041569 -
Aip04g00062 454 CDD AAA 157 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00062 Aip-Chr4 606328 611550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00062 134 379 Calmodulin-binding Proteins AT3G56690 41.870 5.93e-55 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00062 K03066 - gmx:100776268 733.021