Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00045 ATGCTTTTGCTGTGCTTGGGTTGTGTGGAGTCCAACGATGGCGATGGTCAAGGTGCATACATGTTGAAGCTTATGAATGCACTCAAACCCCCTGCCTGGTCTAACACGAAGCCCGTGTGCGAGTGGATAGGCGTGACTTGCAACGATCAAAGTGGAAGGATTGAACAGATCGATCTCAGTTCAAAGTCGCTGACGGGAACAGTTCCTGCAGGCTTCAACGACTCCCTCTCCCACCTCACATTCCTCTATCTCGCCAACCTCACCTTCCTCCAAGAAGTGTACTTCGAAAACAACAACTTCACCTCTATCCCTCATGGTTGCTTCCATGGTCTTACTAGTTTGCAGTCCTTGACCTTGTATAACAATATCAACCTCCCACCATGGAACTTTCCTATCGATTTGACTGCTCACTCCTCCCAACTCTATAAACTCGACCTGTCTTCTACAAATCTCAAAGGCTCCTTACCACCAAACATATCCCATTCCTTCCTAGTTATGGTGTATCTTTATCTCTCTAACAACCACCTCTCCTTCATCCCTGAGGGTTGCTTCCACAACCTAACCAGTTTGGGTGGCCTCTCTTTGGCCAACAATACCAACCTCCCACCATGGACCTTCCCCAACTTGATTCAGTCCACAGAAATAGAAGAGCTCGATCTTACTGCTACAAATATCATGGGCTTTCTACCAGAAATATTTGACTCATTGACAAGTTTGAGGACTTTTGTTCTCTCCAAAAACAGCCTAACTGGTGTCTTGCCAGTGTCTTTTCGAAGGTCGAAGATTGTCACCTTGCATCTCAACAACCAGAAGGATCCCGGGTTGTCAGGTCCAATTGATGTCCTTTCAAACATGCTCAACTTGTCTCATGTGTGGCTTCAGGGGAACTCGTTTACAGGACCTATTCCTGACATGTCTCGCTGCACTGATTTAGAAGATTTACAACTTGCCCACAATCAATTAACAGGTGTGGTCCCAGATTCTCTCATCGCTCATCAATACTTGGAAGATTTTTATTTGGGCTATAACTTTTTGCAAGGTCCTCTACCAAATACTACCTTCAATAGTTTTGCTATTATGGAGAATCTCGGTGTTAACACCACAAATGGCTTCTGTCACAAAGATCCAGGACCTTGTGATCACAAAGTGACCCATTTGCTTCAAATTGCTGCGGAATTCAAGTATCCAATTTTGTTGGCACGTACATGGAAAGGAAATGATGTCTGTAAAGGTTGGCGTTTTATTACGTGTGATGACAAAAATAAGATCAGAATGGTCAATTTATCAAATCTGAAATTGACGGGCACGATCTCACCTGCATTCGCCAATTTAACTGATTTGTGGAAATTGTATTTGGATGGCAATAATTTGACGGGTGAAATTCCTCAAAGATTGACAAGTTTACATGAACTTGAGGTTGTGGATGTCTCTAACAACCATCTTGAAGGAAATATTCCCAAATTCTCACCAAGTGTAAAGTTTATTGCCACAGGCAATGATTTTCCTAATGCTTCCCACCATAGACCAAGGCGAACCTTAACTACTACTTTGATTACAGGCTTATCAGCAGCCAGTGTTGGAATTTTGGTAACATGTGCTGTGGTTATTTATGAAAGCAAGAGGTTACAGAAAATTCTGTTCAAGAAAACAATTGTTAATCACAATATTGAGGATTTGATACAAAGTCATGGGTTTATGGTGCAAAAACGATATAGTTACTCACAGGTAAAAAAGATGACCAATTCATTTTGTGAGAAACTAGGACAAGGAGGATTTGGTGTTGTATATAAAGGAAGTTTAAGTGATGGTCGTCAAGTAGTAGTGAAGATATTGAATGAATCCAAAGGTAATGGAGAAGAATTTATAAATGAGGTTGCAAGTATTAACAGAACATCTCATGTGAATATTGTCCCATTTTTAGGATTTTGTTATGAGCCAAATAAACGAGCTTTGATTTATGAATTAATGCCAAATGGTTCTTTAGACAAATTTATTGATGAAAGGGCATCGTTTAATACTGTGTGCAAATTGGACTGGAATATACTCTACCAAGTTATAATTGGCATAGCTCGTGATCTAGAATATTTACATTGGGAATGTAGCACCAAGATTTTACATCTTGATATTAAACCTCAAAATATTCTTTTGGATAGAGAATTTGTTCCTAAAATTGCTGATTTTGGATTAGCTAAAATATGCACAAAGAAAGAGAGTATTGTATCTCTACAGTGCCCAAGAGGAACTGCAGGATATATTGCACCAGAAGTATATAATCAAATGGACGGTGGAGTTTCTCGAATTTCTCACAAATCCGATGTGTATAGTTATGGGAAGTTGATTCATGTAGTAGTCGGAGGAAAAAAGAATTATAATAGTAAAGATTCTCGTGCAAGTGAAATATTCTTTACAGATTGGATTTATAAGGAATTCGAACAAGATAATCTTCCAGCAAAATGCTTGATGAACATAGAGGATGAAGATGATGATTTAATAAAGAAGATTATTTTGGTAAGCATGTGGTGTATACAAAGAAATCCGTCGAATAGACCGTCCATGAAAAAAGTGATAGAGATGTTAGAAGGACCACTTGATTCTATCCCATTTCCTCCGAAGCCAATATGGTATTCTCCCCAAGGATCAAAGTTGCAATCTCCAGATATGGCTTATGACGATACACATGAGACAGATTCATCAACTTCAGTGCAGAATGATTCCATCAATCCAAATGACGTTGCCTAA 2739 0.3947 MLLLCLGCVESNDGDGQGAYMLKLMNALKPPAWSNTKPVCEWIGVTCNDQSGRIEQIDLSSKSLTGTVPAGFNDSLSHLTFLYLANLTFLQEVYFENNNFTSIPHGCFHGLTSLQSLTLYNNINLPPWNFPIDLTAHSSQLYKLDLSSTNLKGSLPPNISHSFLVMVYLYLSNNHLSFIPEGCFHNLTSLGGLSLANNTNLPPWTFPNLIQSTEIEELDLTATNIMGFLPEIFDSLTSLRTFVLSKNSLTGVLPVSFRRSKIVTLHLNNQKDPGLSGPIDVLSNMLNLSHVWLQGNSFTGPIPDMSRCTDLEDLQLAHNQLTGVVPDSLIAHQYLEDFYLGYNFLQGPLPNTTFNSFAIMENLGVNTTNGFCHKDPGPCDHKVTHLLQIAAEFKYPILLARTWKGNDVCKGWRFITCDDKNKIRMVNLSNLKLTGTISPAFANLTDLWKLYLDGNNLTGEIPQRLTSLHELEVVDVSNNHLEGNIPKFSPSVKFIATGNDFPNASHHRPRRTLTTTLITGLSAASVGILVTCAVVIYESKRLQKILFKKTIVNHNIEDLIQSHGFMVQKRYSYSQVKKMTNSFCEKLGQGGFGVVYKGSLSDGRQVVVKILNESKGNGEEFINEVASINRTSHVNIVPFLGFCYEPNKRALIYELMPNGSLDKFIDERASFNTVCKLDWNILYQVIIGIARDLEYLHWECSTKILHLDIKPQNILLDREFVPKIADFGLAKICTKKESIVSLQCPRGTAGYIAPEVYNQMDGGVSRISHKSDVYSYGKLIHVVVGGKKNYNSKDSRASEIFFTDWIYKEFEQDNLPAKCLMNIEDEDDDLIKKIILVSMWCIQRNPSNRPSMKKVIEMLEGPLDSIPFPPKPIWYSPQGSKLQSPDMAYDDTHETDSSTSVQNDSINPNDVA 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00045 912 ProSitePatterns Protein kinases ATP-binding region signature. 587 609 IPR017441 GO:0005524
Aip04g00045 912 PANTHER RECEPTOR-LIKE KINASE TMK4 168 860 - -
Aip04g00045 912 MobiDBLite consensus disorder prediction 870 912 - -
Aip04g00045 912 Pfam BspA type Leucine rich repeat region (6 copies) 90 123 IPR026906 -
Aip04g00045 912 Gene3D Transferase(Phosphotransferase) domain 1 656 866 - -
Aip04g00045 912 MobiDBLite consensus disorder prediction 894 912 - -
Aip04g00045 912 Gene3D Phosphorylase Kinase; domain 1 555 655 - -
Aip04g00045 912 ProSiteProfiles Protein kinase domain profile. 581 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00045 912 Pfam Protein kinase domain 585 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00045 912 PANTHER RECEPTOR-LIKE KINASE TMK4 15 176 - -
Aip04g00045 912 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672|GO:0006468
Aip04g00045 912 SMART LRR_typ_2 236 259 IPR003591 -
Aip04g00045 912 SMART LRR_typ_2 187 208 IPR003591 -
Aip04g00045 912 SMART LRR_typ_2 163 186 IPR003591 -
Aip04g00045 912 SMART LRR_typ_2 87 110 IPR003591 -
Aip04g00045 912 SMART LRR_typ_2 444 468 IPR003591 -
Aip04g00045 912 SUPERFAMILY Protein kinase-like (PK-like) 559 859 IPR011009 -
Aip04g00045 912 PANTHER OSJNBA0070M12.3 PROTEIN 168 860 - -
Aip04g00045 912 SUPERFAMILY L domain-like 385 488 - -
Aip04g00045 912 Gene3D Ribonuclease Inhibitor 381 501 IPR032675 -
Aip04g00045 912 Gene3D Ribonuclease Inhibitor 19 134 IPR032675 -
Aip04g00045 912 Gene3D Ribonuclease Inhibitor 136 369 IPR032675 -
Aip04g00045 912 SUPERFAMILY L domain-like 38 372 - -
Aip04g00045 912 Pfam Leucine rich repeat N-terminal domain 385 418 IPR013210 -
Aip04g00045 912 Pfam Leucine rich repeat N-terminal domain 17 48 IPR013210 -
Aip04g00045 912 SMART serkin_6 581 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00045 912 Pfam Leucine rich repeat 140 198 IPR001611 GO:0005515
Aip04g00045 912 PANTHER OSJNBA0070M12.3 PROTEIN 15 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00045 Aip-Chr4 452141 456509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00045 569 878 Receptor kinase-like Gene Family AT5G38280 57.188 3.06e-114 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aip04g00045 Pkinase 8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00045 - - aip:107637472 1054.66