Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00043 ATGAAGATGACATTGAGTTCCTTGTTCCTGAGTTGTTACAAGGGTGGTGATCATTCTGATTACCCACCACAGTCTCCTAAGAAATCAAACAACAAAGTGGTGGCAACCAAGGGTCATAGTAGCGGTACTAGTACTACTAGGAGCGGTTCTAACAGAGTTTCGGTTACCGATTTGAGTTTTCCAAGCGCTACCACGCTCTCTGAGGAGATCTCCATATCTCTAGCAGGGACCAACCTTTATGTGTTCACACTCGCCGAACTCAAGATCATTACTCAGAGCTTCTCATCAAGTAACTTTCTTGGTGAAGGAGGCTTCGGACCTGTCCACAAAGGCTTCATTGATGATAAGGTAAGGCCTGGTCTTAAGGCTCAGCCTGTTGCTGTTAAGCTTTTGGATTTGGATGGAACTCAGGGCCACAAGGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTGAGTCACCCGCACCTTGTGAATTTGATTGGATACTGCTGTGAAGAGGAACATAGGCTTCTGGTGTATGAGTATTTACCACGAGGCAGCTTAGAGAATCAACTCTTTAGAAGATACTCTGCGTCATTGCCATGGTCAACAAGAATGAAGATTGCTGTTGGAGCAGCCAAAGGTCTATCCTTTCTTCATGAACAAAAGAAGCCAGTAATCTATAGAGATTTCAAGGCTTCAAACATCTTGTTAGACTCTGATTACAATGCAAAGCTATCAGATTTCGGGTTGGCAAAAGACGGGCCTGAAGGAGATGACACACACGTGTCAACACGAGTGATGGGGACACAAGGATATGCAGCACCGGAATACGTGATGACAGGTCACTTGACAGCAATGAGTGACGTGTACAGCTTCGGAGTGGTGCTGTTGGAGATGCTGACAGGAAGAAGATCAGTGGACAAGGGGCGTCCATCAAGAGAACAGAATCTGGTGGAATGGGCGAGGCCTGCACTCAACGATTCAAGGAAGCTGGGGAGGATCATGGATCCAAGGCTGGAGGGACAGTACTCTGAGATGGGTGCAAAGAAAGCAGCAGCCTTGGCTTACCAGTGCCTCAGCCATAGGCCTAGGAACCGTCCTTCTATGCCCGCCGTGGTTAAGATCCTTGAGCCACTCCAGGACTATGATGATGTCCCCATTGGACCCTTTGTTTACACTGTTCCAAATCATGATGATACCAACACTACCACAGATGCTCAAACTCCCAAGGAGCGGAAGAGAACTCACCATCGTAGGCATCCTCTCAAGTCGCCAAAGTCTTCACCAGATTCACACAATCACAATGCCGATGACAAATCCAATTAA 1311 0.4722 MKMTLSSLFLSCYKGGDHSDYPPQSPKKSNNKVVATKGHSSGTSTTRSGSNRVSVTDLSFPSATTLSEEISISLAGTNLYVFTLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRPGLKAQPVAVKLLDLDGTQGHKEWLTEVVFLGQLSHPHLVNLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYSASLPWSTRMKIAVGAAKGLSFLHEQKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAMSDVYSFGVVLLEMLTGRRSVDKGRPSREQNLVEWARPALNDSRKLGRIMDPRLEGQYSEMGAKKAAALAYQCLSHRPRNRPSMPAVVKILEPLQDYDDVPIGPFVYTVPNHDDTNTTTDAQTPKERKRTHHRRHPLKSPKSSPDSHNHNADDKSN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00043 436 MobiDBLite consensus disorder prediction 419 436 - -
Aip04g00043 436 Pfam Protein tyrosine and serine/threonine kinase 98 370 IPR001245 GO:0004672|GO:0006468
Aip04g00043 436 ProSiteProfiles Protein kinase domain profile. 94 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g00043 436 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 41 415 - -
Aip04g00043 436 Gene3D Phosphorylase Kinase; domain 1 56 176 - -
Aip04g00043 436 SUPERFAMILY Protein kinase-like (PK-like) 70 373 IPR011009 -
Aip04g00043 436 MobiDBLite consensus disorder prediction 23 53 - -
Aip04g00043 436 CDD STKc_IRAK 100 374 - -
Aip04g00043 436 PANTHER OS01G0588500 PROTEIN-RELATED 41 415 - -
Aip04g00043 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Aip04g00043 436 Gene3D Transferase(Phosphotransferase) domain 1 177 381 - -
Aip04g00043 436 MobiDBLite consensus disorder prediction 387 436 - -
Aip04g00043 436 MobiDBLite consensus disorder prediction 19 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00043 Aip-Chr4 419158 421913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00043 82 409 Glycoside Hydrolase AT3G07070 50.000 2.65e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aip04g00043 PK_Tyr_Ser-Thr 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00043 - - gmx:100799411 669.848