Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00031 ATGCAGCAACACAGGTTGAGACAGCATGCTATGATGCAGCACTCTCTCTATCACCACCCTGCTCTCCTAACTCCTCCACAGATTGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTTCATGCCGCAGTGTCTATGTAGGCAACATTCATCCTCAGGTTTCAGAATCCCTTCTTCAAGAGCTTTTTTCAAGTGCAGGCGCACTTGAAGGATGCAAGCTCATTAGGAAAGATAAGTCGTCATATGGCTTCGTTGATTACTTTGATCGCAGTGCAGCTGCATTTGCCATTGTAACTCTCAATGGAAGGCACATCTTTGGCCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGACCTTAGCCCTGAGGTTACAGATGCAACCTTGTTTGCTTGCTTCTCTGTGTATCCCACTTGTTCAGATGCGAAGGTAATGTGGGATCAGAAAACAGGGCGGTCCAGGGGATTTGGCTTTGTTTCTTTTCGAAATCAGCAGGATGCCCAAAGTGCCATAAATGATTTAACTGGTAAGTGGCTTGGAAGTAGACAGATACGCTGCAACTGGGCCACTAAAGGGGCTAACAGCAATGATGAAAAGCAGAGTTCGGATTCTAAAAGTGTTGTGGAGTTAACTAATGGAACATTGGAAGAAGCGCAGCAAGTAACCAGTGATGATGCACCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTCGCTCCAGAGGTTACATCTGTTGATCTTCATCACCATTTTCATGCCCTTGGTGTTGGAATTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGATTTGTGAGATACAGTACACATGATGAAGCAGCTCTTGCTATCCAGATGGGTAATGCTCGGATTCTGTTTGGCAAACCTGTCAAGTGTTCATGGGGTAGCAAGCCCACTCCTCCTGGAACAGCCTCTACTCCTCTTCCCCTACCTAGCACTGCACATGTGCCTGGCTTTTCTCCTGTGGGACTTGCAGCGTATGAACGTCAAATGGCTCTGAGCAAGATGGGTGGTGCGCATGCGGCGCTAATGCATCAGCAGAATCAGCATGCTGCCATGAAGCAGGCAGCCATGGGAATGGGTGCTCCTAACCAGCACCTTATGTACTATCAGTAA 1203 0.4647 MQQHRLRQHAMMQHSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVSESLLQELFSSAGALEGCKLIRKDKSSYGFVDYFDRSAAAFAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPTCSDAKVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGANSNDEKQSSDSKSVVELTNGTLEEAQQVTSDDAPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGIIEDVRVQRDKGFGFVRYSTHDEAALAIQMGNARILFGKPVKCSWGSKPTPPGTASTPLPLPSTAHVPGFSPVGLAAYERQMALSKMGGAHAALMHQQNQHAAMKQAAMGMGAPNQHLMYYQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00031 400 Gene3D - 130 230 IPR012677 -
Aip04g00031 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 391 - -
Aip04g00031 400 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 391 - -
Aip04g00031 400 SMART rrm1_1 47 116 IPR000504 GO:0003723
Aip04g00031 400 SMART rrm1_1 132 205 IPR000504 GO:0003723
Aip04g00031 400 SMART rrm1_1 253 322 IPR000504 GO:0003723
Aip04g00031 400 Gene3D - 1 129 IPR012677 -
Aip04g00031 400 CDD RRM1_TIA1_like 48 118 - -
Aip04g00031 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Aip04g00031 400 SUPERFAMILY RNA-binding domain, RBD 241 330 IPR035979 GO:0003676
Aip04g00031 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Aip04g00031 400 Gene3D - 231 330 IPR012677 -
Aip04g00031 400 SMART rrm2_1 132 205 IPR003954 GO:0003676
Aip04g00031 400 SMART rrm2_1 47 116 IPR003954 GO:0003676
Aip04g00031 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Aip04g00031 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Aip04g00031 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 319 IPR000504 GO:0003723
Aip04g00031 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Aip04g00031 400 CDD RRM3_TIA1_like 252 326 - -
Aip04g00031 400 SUPERFAMILY RNA-binding domain, RBD 45 211 IPR035979 GO:0003676
Aip04g00031 400 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00031 Aip-Chr4 350032 355650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00031 42 320 Eukaryotic Initiation Factors Gene Family AT3G16380 26.351 9.11e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00031 K13201 - gmx:100813736 714.146