Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00011 ATGGCATTTCAAGATTTTGATGTCATCTCGGAACGTCGAAGAAATGAGCAGAAGGCAAAACTCAAGAAGAGGATCATCATGGGCGTTGTAGCCGCCATCGTCCTTGTAGGCATCATCGGCGCAGTCTTCGTCGTGGTATTGCCAGGAAATGACAGCAAAAGCAACAGCACTCCATCGTCGCATTCTCCATCATCATCTTCGTATTCGTCGTCGTCGTCGTCACCACCATCAATCGCAAAATCGGAGAAGATGGTGGAACTTGTCTGCGATGGTGCCGAGTACAAAGACAAATGTGAAGGACCTCTCTCAGATGCATTGAAGAACGACCCTTCCATGTCGCAACCCAAGGATATTCTCAAGTACTACGCCAAATATGCAGAGGATGCAGTTAACGCTGCTTTCGCCAAAACCGAAACCCTCAACTTCGAATCCCCGGAGGAGCAAGGCGCCTATGAAGATTGCAAGCAGATCTTCTCTGATGCCAAGATCGACCTGGAGGCCATCACGAACCAAGTATCCGGAGACAACATCGATTTGAGGAACATCACCAACAGTACTCCTGATTTGAACAGCTGGCTCAGTGCTGTCATCAGTTACCAACAAACTTGCATCGACGGTTTCCCTGAGGGACAGTTGAAGACTGATCTTGAGAACCTCTTCAAGGACTCTAAGGAGTTTGTTAGCAACACACTTAACATTGTTTCCAAGGTTGGTAACTTCCTCTCCTCCTTGCCAACGTTCCGGAGTTTGGCCGAGGAGAAGCATCAGTCGCCGCTCGATTTCCTGGACAAACGCGATGGCTTTCCTAACTGGCTTAGCCAGAAGGACAGGAGGATGTTGAAGGCTGCCGATAACAAGCCCACACCTAATGTCACCGTCGCCAAGGATGGCTCCGGGGACTTCAAAACCATCTCTGAAGCTTTGGCTGCCATGCCTAAGACATACGAAGGAAGGTATGTGATTTTTGTTAAGGAAGGAGTGTACGATGAGACAGTGACAATAACACAGAAAATGCAGAACGTAACCTTGTTTGGTGAAGGTTCCCAGAAGAGCATCATCACCGGCAACAAAAACTTTAGGGACGGTACCAGGACCTTCCTAACTGCCCCATTTGCTGTGCTAGGAGATGGATTTATTGGAAAGTCGATGGGATTCAGGAACACAGCTGGGCCAGAAGGACACCAAGCTGTGGCTGCGAGAGTGCAAGCTGACCGCGTGGTGTTTGTGAACTGCCGCTTCGAGGGTTACCAAGACACACTATACGCCCAAACCCACAGGCAATTCTACAGGAGTTGCATCATTTCCGGCACCATCGATTTCATCTTTGGTGACGCCGCAGCAGTTTTCCAGAACTGTATCATGGTTGTTAGGAAGCCAATGGACAACCAACAAACCATTATAACCGCACAAGGCAGAGTTGATCCAAAACAAACCACCGGAATAGTCCTCCAGAAGTGCATCATCAAGGCTGATGACTCGCTTGTGCCTGTCAAGGCCCAGTTCAAGAACTACCTTGGTAGGCCATGGAAGGAGTACTCCAGGACAGTAATCATGGAATCCGACATCGGAGATCTCATTCACCCGGAGGGATGGCTTCCTTGGGCCGGCGACTTCGCTCTTAAGACACTCTACTATGCTGAGTATGCAAACACTGGACCTGGTTCCAAGACCGATGGCAGGGTTAACTGGCCCACCTACCATGTCATCAACAAGCAAGAAGCTGCCCAGTTCACTGTCGCACAATTCTTGAAGGGATCTTGGGTCCAGGGCACCGGTGTGCCATCAGTTCAGGGTTTCTATAACTAA 1806 0.495 MAFQDFDVISERRRNEQKAKLKKRIIMGVVAAIVLVGIIGAVFVVVLPGNDSKSNSTPSSHSPSSSSYSSSSSSPPSIAKSEKMVELVCDGAEYKDKCEGPLSDALKNDPSMSQPKDILKYYAKYAEDAVNAAFAKTETLNFESPEEQGAYEDCKQIFSDAKIDLEAITNQVSGDNIDLRNITNSTPDLNSWLSAVISYQQTCIDGFPEGQLKTDLENLFKDSKEFVSNTLNIVSKVGNFLSSLPTFRSLAEEKHQSPLDFLDKRDGFPNWLSQKDRRMLKAADNKPTPNVTVAKDGSGDFKTISEALAAMPKTYEGRYVIFVKEGVYDETVTITQKMQNVTLFGEGSQKSIITGNKNFRDGTRTFLTAPFAVLGDGFIGKSMGFRNTAGPEGHQAVAARVQADRVVFVNCRFEGYQDTLYAQTHRQFYRSCIISGTIDFIFGDAAAVFQNCIMVVRKPMDNQQTIITAQGRVDPKQTTGIVLQKCIIKADDSLVPVKAQFKNYLGRPWKEYSRTVIMESDIGDLIHPEGWLPWAGDFALKTLYYAEYANTGPGSKTDGRVNWPTYHVINKQEAAQFTVAQFLKGSWVQGTGVPSVQGFYN 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00011 601 Gene3D - 284 599 IPR012334 -
Aip04g00011 601 Pfam Pectinesterase 290 585 IPR000070 GO:0030599|GO:0042545
Aip04g00011 601 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 237 IPR035513 -
Aip04g00011 601 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 238 IPR035513 -
Aip04g00011 601 Pfam Plant invertase/pectin methylesterase inhibitor 85 233 IPR006501 GO:0004857
Aip04g00011 601 TIGRFAM PME_inhib: pectinesterase inhibitor domain 67 235 IPR006501 GO:0004857
Aip04g00011 601 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Aip04g00011 601 PANTHER PECTINESTERASE 14 599 - -
Aip04g00011 601 SMART PMEI_2 80 233 IPR006501 GO:0004857
Aip04g00011 601 MobiDBLite consensus disorder prediction 53 78 - -
Aip04g00011 601 CDD PMEI-like_3 87 236 - -
Aip04g00011 601 PANTHER PECTINESTERASE 14 599 - -
Aip04g00011 601 SUPERFAMILY Pectin lyase-like 288 597 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00011 Aip-Chr4 139193 141579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00011 1 601 Carbohydrate Esterase AT4G33230 47.480 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00011 - - gmx:100784679 797.349