Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00010 ATGGCTTCTTCTACGTCTTCTAAAGCCTCCCTTTTTCTCTTATCAACAATCTTATTCTTCTCAAATGCTTGTGCTATCAGCAACACCCCCAATGCAGAAAACCTCAATGCATTGAAATCCTTTTGCAGAACCACACCATACCCTGAAGTTTGCTTCAACTCATTGAAGCTATCAATCTCTATAACCATATCTCCAAACATACTCAACAACCTCCTTCAGTCTCTCCAAGTAGCTATATCAGAAGCCACAAAGCTATCTGATCTTTTCAACAATGCTGGAAACTCAAACAGCATCATAGAGAACAAAATAGGAGCAGTTCAAGACTGCAAGGAGCTCCACAAACTCACATTGTCTTCTCTGAAACGCTCTCTATCCGCAATCCGTTCGCAGAACTCGAAGGACTTGGTTGATGCAAGAACATACCTTAGTGCAGCGTTAACCAACAAAGAAACGTGTTTAGAAAGCATGGAGTCAGCTTCTGGTACCCTTAAGCCAACTCTTGTGGATTCTGTGACCAACACTTTCAAATATGTCAGCAACACTCTCTCAATGCTCCCTCGTAAGCCTGATATGAAGAAGAAGCAGAAGAAGAGCACTCCAAAGTGGTTTTTTTCAAAATCAGATGATGAAGGGTATGATCCTAGTGAAGTGATTGTTGTGGCTGCAGATGGGAGTGGGAACTTTAGTACTATCAATGAAGCTATTGACTTTGCTCCAAGTAACAGCTTTGACAGGACAGTGATATATGTGAAAGAAGGGTTATACGAGGAGAATGTGGAGATTCCAAGTCATAAGACCAATATTGTTTTGCTTGGAGATGGAAGAGATGCCACTGTCATCACTGGTAACAGAAGTTTTGTTGATGGCTGGACTACTTTTAGATCTGCCACTCTAGCTGTGTCTGGGGATGGTTTTCTGGCTCGAGACATAGCAATTGAGAACAAAGCGGGGCCAGAGAAGCATCAAGCAGTTGCACTGAGAGTTAATGCAGACTTGACTGCATTCTACAGATGTTCAATCTATGGCTATCAAGACACACTCTACACTCACTCCTTCAGACAATTCTACAGAGAAAGCGACATATATGGCACCATAGACTTCATATTCGGAAACGCGGCAGCGATCTTTCAAGGCTGCAACATTGTTTCACTAATGCCAATACCCGGCCAGTTTACGGTTATTACCGCGCAATCACGAAGTAGCCCTGATGAGGACACAGGGATCTCAATCCAGAACAGTTCAATTGTAGCAAGCACTGATTTGAGTTCAAATTCGACGATGGTCAAGAGTTACCTTGGGAGGCCATGGAGGGTGTATTCTCGCACTGTGTACATAGAGTCGTACATTGATAAGTTCATTGACCCGTTGGGATGGACAAAGTGGAACAATAATAATGATGGTGATACTGAAGGGCTTGAGACTCTGTATTATGGAGAGTATGAGAATTATGGGGGTGGTTCAGACACTCGTAACCGTGTGGATTGGCCAGGATTCCATTTGTTGGATTACAATGATGCTTATAACTTCACTGTTTCAGAGTTCATTGCAGGTGATGCTTGGCTTGGTTCTACTTCTTTTCCTTATGATGATGGGATTTGA 1599 0.4278 MASSTSSKASLFLLSTILFFSNACAISNTPNAENLNALKSFCRTTPYPEVCFNSLKLSISITISPNILNNLLQSLQVAISEATKLSDLFNNAGNSNSIIENKIGAVQDCKELHKLTLSSLKRSLSAIRSQNSKDLVDARTYLSAALTNKETCLESMESASGTLKPTLVDSVTNTFKYVSNTLSMLPRKPDMKKKQKKSTPKWFFSKSDDEGYDPSEVIVVAADGSGNFSTINEAIDFAPSNSFDRTVIYVKEGLYEENVEIPSHKTNIVLLGDGRDATVITGNRSFVDGWTTFRSATLAVSGDGFLARDIAIENKAGPEKHQAVALRVNADLTAFYRCSIYGYQDTLYTHSFRQFYRESDIYGTIDFIFGNAAAIFQGCNIVSLMPIPGQFTVITAQSRSSPDEDTGISIQNSSIVASTDLSSNSTMVKSYLGRPWRVYSRTVYIESYIDKFIDPLGWTKWNNNNDGDTEGLETLYYGEYENYGGGSDTRNRVDWPGFHLLDYNDAYNFTVSEFIAGDAWLGSTSFPYDDGI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00010 532 PANTHER PECTINESTERASE 10 531 - -
Aip04g00010 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 185 IPR035513 -
Aip04g00010 532 SUPERFAMILY Pectin lyase-like 214 529 IPR011050 -
Aip04g00010 532 Gene3D - 213 532 IPR012334 -
Aip04g00010 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 187 IPR035513 -
Aip04g00010 532 CDD PMEI-like_3 40 184 - -
Aip04g00010 532 Pfam Pectinesterase 218 518 IPR000070 GO:0030599|GO:0042545
Aip04g00010 532 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 184 IPR006501 GO:0004857
Aip04g00010 532 PANTHER PECTINESTERASE 10 531 - -
Aip04g00010 532 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Aip04g00010 532 SMART PMEI_2 33 184 IPR006501 GO:0004857
Aip04g00010 532 Pfam Plant invertase/pectin methylesterase inhibitor 37 184 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00010 Aip-Chr4 135202 137535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00010 40 532 Carbohydrate Esterase AT2G26440 65.825 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00010 - - gmx:102665651 737.643