Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g00002 ATGGGTTTCTATGCTGAGGACTCATCATCTGCATATGGTTGGACAATAGGTCAAGCCATATATGAAGCAGCTCTAATCGTTGCAGTTCTGAGATGGGTCTTGTGCTTGGTTTTCAGGCTCATCAAAGATAGAGGAACAACACCTTCTTCTTCTTCTTGTACTCTTGTGTTGACCACGTTTCGTGAGATAATGGAGAGGCTTCCAGAGACAGAAGAAGATACATCTTGTGCAGTGTGCTTGAACCAGATGAAGATGGAAGATGAGGTTAGGGAACTAATGAACTGCTACCATGTCTTCCACAGAGAATGCATCGACAAATGGTTGGACAATGATGACAACAACCATAACCCTACTTGCCCTCTTTGTAGAGCACCTTTGCTCACTCTTAATAATAATTGCAGTTATTCTTCATCAGAGAGCTCTTTTGGTTGTGTGCCACCATCTCCTCAACCTAGTTGGGCTGTGGAGAGACTTCTCTACCTCTTCGGAGATGATCTTCTTCCTTGCTAG 510 0.4373 MGFYAEDSSSAYGWTIGQAIYEAALIVAVLRWVLCLVFRLIKDRGTTPSSSSCTLVLTTFREIMERLPETEEDTSCAVCLNQMKMEDEVRELMNCYHVFHRECIDKWLDNDDNNHNPTCPLCRAPLLTLNNNCSYSSSESSFGCVPPSPQPSWAVERLLYLFGDDLLPC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g00002 169 ProSiteProfiles Zinc finger RING-type profile. 76 123 IPR001841 -
Aip04g00002 169 Pfam Ring finger domain 75 123 IPR001841 -
Aip04g00002 169 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 168 - -
Aip04g00002 169 SUPERFAMILY RING/U-box 70 132 - -
Aip04g00002 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 128 IPR013083 -
Aip04g00002 169 SMART ring_2 76 122 IPR001841 -
Aip04g00002 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g00002 Aip-Chr4 51251 52200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g00002 1 166 C3H Transcription Factor Family AT5G20885 45.989 1.88e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g00002 K16281 - gmx:111138523 227.639