Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g05025 ATGGAATATGGTGGCATAGTGCACAATGAAAATGGTGGGTTTGGGAGCTTGTCGGAGTCAGCGGTAGAGGCAGAAGTAGATTTGGTGGACGAGCTACTGGTGGAGGGGTGCTGGGTGGAGACAACTAGTGCAGGAGGGTGCTACAACTGGATGCATAATCCATCAGATGCAGTAGTGGCGCCGCAACCACAGTACTTGGAAATGCTGCAGCTGCAGCTGCAGGAGGAATCATCATCGTCGTCATCAGATCAGGAGAGCCTTGTGGGCAAGAGGTGGTGGATCGGGCCTACTAGGCCGGGCCCTTCATCCTCTTCTTCTTCTTCTTCTTCCTCCTCTGTAAAGGAGAGATTAGTGGTCGCGGTCGGGTACTTGAAAGACTACACAAAGAACAACAATCTGCTCATTCAGATATGGGTGCCCCCACGGAGATCACCACTACCCCTTCCCCTTCCCCTTCCACTTGATGTGCTCGCCTTTCCCAACCCCAGCCCTAACCCTAACCCTAACCTATGTGTTCGCTTCTTGAGAAGCCATGAATATTCTCATCATTATCAGGCGCAGCAGCACTACGATCTCCGTGGATCCATCGCCTTACCCGTCTTTGAACGAGGCACTGCCACGTGCCTTGGCGTCCTCGACATTCTCATCACCAACCACCTCAACCTCACCAACAACTATCGCCCTCAGCTTGACAATGTCTGCAACGCTCTCGAGGCCGTCGATTTTAGGAGCTCTCATCAGAACTTGAACGCGAACTTTATCCCTCCGGCCATAAAGGTGTATGAGGAGCTATACCAAGCAGCACTAAATGAGATAGTGGAGGTGTTGACATCGGTGTGCAAGACGCAGAATCTTCCTCTAGGGCTGACATGGGCGCCGTGCATCCAACAAGGAAAGTGTGGGTGCGGGCACTCATCGGCAATGTGCGTGTCCACGGTGGATACAGCGTGCTATGTGGGGGATCTGGAAATGCTGGGCTTCCAGGAGGCGTGCTCAGAGTACCACCTCTTCAAGGGGCAAGGCATAGTTGGCACCGCCTTCACATCAGCCAAGCCCTGCTTCGCAATCGACATAACAGCCTTCAGCAGAGCAGAATACCCGCTTTCTCACCTCGCTAACATCTTTGGCTTGCATGCCGCCGTCGCCATCCCCCTCCGCAGCCTCTACACCGGATCCGCTGACTTCGTCTTGGAGTTCTTCCTGCCAAAGGACTGCCATGACACCGAGCAGCAGAAGCACATGCTCAATTCCCTCTCCATGCTCGTCCAGCAAGCTTGCCGGAGCTTGCACGTTGCCACCGACGACGACTTCACCCCTCCGATGCTCACACATCATCAGGCGCAAGCACAAATAATGGAAGAGGCGTGCTCGAAGGATCAGTCGTGGATAGCGCACATGATGGAGGCGCAGGTGCAGCAGAAGGGGAAAGGGGTGTGCGTGTCGTTGGAGTACCAAATGGAAGAGCCCAAAGAGGAGTTCAAGGTGACAACCAACTGGGACACCACCAACGACCAAGCCCATCACCAGCTCTTCTCCTCATCAGATTTCGGCCACATTGACGTGCTTGAGCACAGTAGGTCGAGGGCCAGCACTGCCGTGGACGGCGGGGAGGAGTCTTACGCCTTGGGTGGGCGGCGCTCCTCTTCTTCGGGTTCGGGCGGCAGGAAGTCAGGCGACAAGAGGCGAACCAAGGCTGAGAAAACTATCAGCCTGCCTGTCCTCAGACAGTACTTCGCCGGAAGCCTCAAAGACGCTGCCAAGAGCATTGGAGTGTGTCCCACGACTCTGAAAAGGATATGCAGGCAGCATGGGATAACAAGGTGGCCTTCCAGGAAAATAAAGAAGGTAGGGCACTCTTTGAAGAAACTTCAGCTTGTGATCGATTCGGTGCAGGGTGCAGAGGGTGCCATACAGATTGGCTCCTTCTATGCCAGCTTTCCCGAGTTGAGCTCCACGGATCTCTCTTCCCGTTCCGAATCATCACCATCCAAGAAAACCCACACTACAAATATTCCTCATCATCAGAATCCCAATAACAATACATTCTTGAAATCCCCACCCTCCTCTGCATGCAGCCAGACCTTAGATGTTGTCATGACAGAGAGCTCCGAGGCAGCATTGCTGCTCAACAGAGCTCACAGCGAGGCGGCAGAGTTGCTGCAGCATGCATCCCTCCAATCACAAGAGGATACAAAGCATAATAGTTTCATCAGCAGCAGATCCAATAATAAGAGCCATCATCATCACTCTCAAGACAGAGACAAAGAGAGGGGTGCTTTCAGGGTCAAAGCTACTTTTGGGGACGAGAAGATCCGGTTCAGCTTGCAGCCCAATTGGGGGTTCAGAGATCTACAGCTTGAGATGGCAAGGCGCTTCAACTTGAACGATATTAGCATCAGCAGCAGCAACATCGATCTCAAATACTTGGATGAAGATGGGGAGTGGGTTTTGTTGGCATGCGATGCAGATCTTGAGGAATGCAAGGACATACACAGATCATCTCAGAGCCGAACCATCCGCCTCTCACTTTTTCAAGCTTCCCCCCTCAATCATCTAGCAACAAACACTTTTGGCAATGGCACCACCAGCCCCTCCTAG 2598 0.5312 MEYGGIVHNENGGFGSLSESAVEAEVDLVDELLVEGCWVETTSAGGCYNWMHNPSDAVVAPQPQYLEMLQLQLQEESSSSSSDQESLVGKRWWIGPTRPGPSSSSSSSSSSSVKERLVVAVGYLKDYTKNNNLLIQIWVPPRRSPLPLPLPLPLDVLAFPNPSPNPNPNLCVRFLRSHEYSHHYQAQQHYDLRGSIALPVFERGTATCLGVLDILITNHLNLTNNYRPQLDNVCNALEAVDFRSSHQNLNANFIPPAIKVYEELYQAALNEIVEVLTSVCKTQNLPLGLTWAPCIQQGKCGCGHSSAMCVSTVDTACYVGDLEMLGFQEACSEYHLFKGQGIVGTAFTSAKPCFAIDITAFSRAEYPLSHLANIFGLHAAVAIPLRSLYTGSADFVLEFFLPKDCHDTEQQKHMLNSLSMLVQQACRSLHVATDDDFTPPMLTHHQAQAQIMEEACSKDQSWIAHMMEAQVQQKGKGVCVSLEYQMEEPKEEFKVTTNWDTTNDQAHHQLFSSSDFGHIDVLEHSRSRASTAVDGGEESYALGGRRSSSSGSGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSSTDLSSRSESSPSKKTHTTNIPHHQNPNNNTFLKSPPSSACSQTLDVVMTESSEAALLLNRAHSEAAELLQHASLQSQEDTKHNSFISSRSNNKSHHHHSQDRDKERGAFRVKATFGDEKIRFSLQPNWGFRDLQLEMARRFNLNDISISSSNIDLKYLDEDGEWVLLACDADLEECKDIHRSSQSRTIRLSLFQASPLNHLATNTFGNGTTSPS 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g05025 865 SMART PB1_new 759 846 IPR000270 GO:0005515
Aip03g05025 865 SUPERFAMILY CAD & PB1 domains 748 848 - -
Aip03g05025 865 PANTHER PROTEIN NLP8 29 141 IPR045012 GO:0003700
Aip03g05025 865 PANTHER PROTEIN NLP8 159 851 IPR045012 GO:0003700
Aip03g05025 865 MobiDBLite consensus disorder prediction 725 758 - -
Aip03g05025 865 ProSiteProfiles PB1 domain profile. 759 846 IPR000270 GO:0005515
Aip03g05025 865 CDD PB1_NLP 760 845 IPR034891 -
Aip03g05025 865 Pfam PB1 domain 760 845 IPR000270 GO:0005515
Aip03g05025 865 MobiDBLite consensus disorder prediction 725 741 - -
Aip03g05025 865 MobiDBLite consensus disorder prediction 653 688 - -
Aip03g05025 865 Pfam RWP-RK domain 569 616 IPR003035 -
Aip03g05025 865 Gene3D - 757 844 - -
Aip03g05025 865 PANTHER PROTEIN NLP2 159 851 - -
Aip03g05025 865 PANTHER PROTEIN NLP2 29 141 - -
Aip03g05025 865 MobiDBLite consensus disorder prediction 526 566 - -
Aip03g05025 865 ProSiteProfiles RWP-RK domain profile. 555 636 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g05025 Aip-Chr3 134834109 134837869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g05025 11 865 NLP Transcription Factor Family AT4G35270 42.052 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip03g05025 PB1 9.3e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g05025 - - aip:107633985 1612.43