Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04980 ATGCAGGTTGTTCGATCTCATCAGAGTCACAGGAGCTTCTCCTCCTCCAGTGGCTCCGTTTCAGCCTCTCCGACCCTTCCCCTTTATCGCTCCGCTCCAGAGCTCGAAGTCAGGCTAGAAGATTTCGAATCTTTTGCCATCGATCGTCTCCGAGTTCTCAAGGGGATCTCTGATGGCTTGTCAAGGGGAAAGAAACCGGACGAAATGGAAAAATTGGTAAATGAGCTGTGGAAAACAAATATGAGACATCAAGATTCGTCTCAGGTTCTGAACAAGGATATTATATCTCATTTTGTTCTCCGTCTTGTGTATTGCAGAACGGAGGAATTGAGGAAATGGTTTCTTTCTATGGAATCTGCACTCTTTCGCCACCGATTTCGTAATCAAACTGCTGAAGCTCAGCGGGCCATCATGGAAGAATTTGACCTTCCTTGCAAGGCTGTAAGCAATGCAGAATTTGAGAGCTTGAAAGACAAATTGGGACAAGTTGCACGTTCTATTGGTCATAACCTGTCTTTATCCACTACGGATGCAATCTACTATAAGGTACCATTTGAAGAAGTTCCAGAGCTTGTAACTGGACGGAAAGTATTTATAAATCAGGGATATGCATACGTTGCAATGAATCAGGTTGTCTCACTTGTAGCCACAATTTTTCGTAGTCTTCTGTCAAAGGCACTCATCCTAACAAACAGAAAATGGGCAACTTCAATTAGAGAACAAGAACAACATAGGTTGACTCCTATTGTGGAGGCCCTGTGTTCGAGTTATTTGGGTCCTGATTTTTCTCAGCCTAAAGAATATGGTGAGATATCATTAAAGGACATTGATCAAGTTGCCAAGAGCTCATTTCCTTTGTGCATGCGTCACCTATTTGAAAAGCTGAGAGAGGATCATCATTTAAAGCATGCAGGGAGGATGCAACTAGGCTTATTTCTGAAGGGTGTTGGCCTGAACGTAGATGATTCACTTGCATTTTGGAGAGAGGAGTTCTCTAAAAAGGTTGGTCTGGAGAAGTTTGAGAAAGATTATGCATACAACATACGCCATAATTATGGGAAAGAAGGGAAGAAAACTGATTATACTCCCTATTCTTGTCAAAAGATTATTTTATCAACTCCTGGTGTTGGAGATCATCATGGTTGCCCTTATCGACATTTTGGCGAGGAGAATCTAAGAGCTGCTCTCAGTAGAATGGGGGTTAATAGTCGGGCAATGGAAGATGTGATGGGCAAAGTGAGAAATAGAGATTATCAGTTGGCCTGCACCTTGACATTTGAAGCTCTTCATGCGGCGTCATGTGATGCAGGGATTAACCATCCAAATCAATACTTCAGTGACAGTCAAAGGCTATTAAAGGCAAAGAAGGACTCTTCAACGTAA 1383 0.4252 MQVVRSHQSHRSFSSSSGSVSASPTLPLYRSAPELEVRLEDFESFAIDRLRVLKGISDGLSRGKKPDEMEKLVNELWKTNMRHQDSSQVLNKDIISHFVLRLVYCRTEELRKWFLSMESALFRHRFRNQTAEAQRAIMEEFDLPCKAVSNAEFESLKDKLGQVARSIGHNLSLSTTDAIYYKVPFEEVPELVTGRKVFINQGYAYVAMNQVVSLVATIFRSLLSKALILTNRKWATSIREQEQHRLTPIVEALCSSYLGPDFSQPKEYGEISLKDIDQVAKSSFPLCMRHLFEKLREDHHLKHAGRMQLGLFLKGVGLNVDDSLAFWREEFSKKVGLEKFEKDYAYNIRHNYGKEGKKTDYTPYSCQKIILSTPGVGDHHGCPYRHFGEENLRAALSRMGVNSRAMEDVMGKVRNRDYQLACTLTFEALHAASCDAGINHPNQYFSDSQRLLKAKKDSST 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04980 460 Pfam Eukaryotic and archaeal DNA primase, large subunit 180 445 IPR007238 GO:0006269
Aip03g04980 460 PANTHER DNA PRIMASE LARGE SUBUNIT 1 456 IPR007238 GO:0006269
Aip03g04980 460 CDD PriL_PriS_Eukaryotic 28 448 IPR016558 -
Aip03g04980 460 PANTHER DNA PRIMASE LARGE SUBUNIT 1 456 - -
Aip03g04980 460 MobiDBLite consensus disorder prediction 1 23 - -
Aip03g04980 460 Gene3D - 1 253 - -
Aip03g04980 460 PIRSF DNA_primase_large 1 460 IPR016558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04980 Aip-Chr3 134482238 134488960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04980 1 459 Core DNA Replication Machinery Family AT1G67320 65.314 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04980 K02685 - gmx:100816023 758.444