Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04979 ATGGGAAGGGGAAGGGTAGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAACGGGCTTCTGAAGAAGGCGTATGAGCTTTCAGTTCTATGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACACTAGAGAGGTACCAGAAATGTAACTATGGAGCACCGGAAACTAATGTGTCAACTAGGGAAGCCTTGGTAATGGAATTAAGCAGTCAACAAGAATACTTGAAGCTGAAGGCACGTTATGAAGCCCTACAAAGGTCCCAGAGAAACCTGATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTGGAGTCACTGGAAAGGCAGCTAGATTCGTCGTTGAAGCTAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTATCGGAACTTCAACGTAAGGAACACTTGCTAAGTGAGGCTAACAGGGCTCTCAGACAAAGGCAGTTGGAAGGGTATCAAATAAATCCAATGCAGCTGAATCCTGGTGGTGTTGATGATATGGGATATGCCCGCCATCCACCTCAACCTCAGCCGGATCCTCTTTTCCAGCAATTGGATTGTGAGCCTACCTTACAAATTGGATATCAGCCTGATCCAGTATCAGTGGTCACGGCAGGCCCAAGCATGGGCAATTACATGGGAGGATGGCTACCATAG 738 0.4675 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKLIRSTRTQFMLDQLSELQRKEHLLSEANRALRQRQLEGYQINPMQLNPGGVDDMGYARHPPQPQPDPLFQQLDCEPTLQIGYQPDPVSVVTAGPSMGNYMGGWLP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04979 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip03g04979 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip03g04979 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip03g04979 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aip03g04979 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 232 - -
Aip03g04979 245 Coils Coil 128 148 - -
Aip03g04979 245 ProSiteProfiles K-box domain profile. 91 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip03g04979 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Aip03g04979 245 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Aip03g04979 245 Pfam K-box region 93 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip03g04979 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Aip03g04979 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip03g04979 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip03g04979 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip03g04979 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip03g04979 245 Coils Coil 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04979 Aip-Chr3 134458019 134461464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04979 1 245 MADS-box Gene Family AT1G24260 72.470 4.30e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip03g04979 K-box 4.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04979 - - gmx:100778931 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04979 03 134458019 134461464 Aip03g04979 03 134458019 134461464 ECH