Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04976 ATGGCAACCGGTGATGATTACAATATTGATGATTTGTTTCGAGAAGCTCAAAGCAGATGGCTGAAGCCTGTGGAAGTGATGTACATTTTACAGAATCATGACAAGTACCAGTTCACACAAGAGCCCCCGCAACAGCCAACCAGTGGATCACTTTTTCTCTTTAACAGAAGAGTCCTGCGCTTCTTTCGTAGAGATGGCCATAACTGGCGCAAGAAGAAAGACGGAAGGACTGTCGGAGAGGCACACGAACGTCTTAAGGTTGGAACTGTCGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTATAGAGAAACAAGTGAGGGAAGGTCCAGCTCTGGACCTGGCACACAATTGTCACCAAGTTCCTCTTCTGCATTTGGCCAGAGTCCTAGCTCATATTCTGCTCAGACACCATTGTCAACATCTGTACTTGGTGATCCATCTGAACCTAATCAGAGTTACTCTAGTTCTGGCACCGGAGAAGTTACCTCTGATGTATTCATCATGAATGATGGAATGAGTCACCTGGATGGGACATATGCAGACTCAGGAACTTCAACTGAAGTTGAGGTTACTCGAGCTTTGTTGCGCAGATTGGAGGAGCAGTTAAGTTTGAATGAAGACAGCATCAAAGAAATTGCTTCCTTCTACAGTGAGAAAGAAATTACAGATGAAGGTGATAAGTCTTATGAATTAATGGACCATACATACCGTGATGGAAATGAAAAGGATATATGGACAGAGGTGCTGGAATCATGCAAGTCGTCATCCACAGCCAGGTTGCCACAGAAAAATATATACATGCCAGCTGGAGAAGAAAATTCACCTTCTTTGTCAAGAAAGGAACCAATTGCCAATCAGGATGACGGTCACTGGCTAAACTTCAACAACAGTAATAACGCAGAAAACTCTGTTTTCTCACTACCTGAAGGTGATAGTGGAGTCAAATATCCTCCATATTCTTCTGTGCTAGGGGCACAAAAAGCTAATTCTGAGTACTATGCAACATTGTTTGCCCAAAGCCAAATTGGACCATCTCTGGATGCAGACTCAAGCTTGACTGTCTCACAAAAGCAGAAATTTTCTATTAAGGCAGTCTCCCCAGAATGGGGTTATACCACTGAGACTACTAAGATCATCATTGTTGGGTCTTTTCTGTGTCATCCCTCAGATTCTGCCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCCATTGAGATAATTCAGGACGGTGTAATCAGTTGTGAAGCTCCATCTCGCCTTTCTGGAAAGGTTAATCTCTGCATTACTTCTGGTAATAGGCAGTCCTGCAGTGAAGTCAGAGAGTTTGAGTATCGTAATAAGACAAGTATTTGCACTTACTGTAACTCATCGGCAACAGAAGCCAACAGAAGTCCAGAAGAGCTGCTGTTACTCGTTAGATTTGCACAGATGCTGCTTTCTGGTTCAACTACAAAGAATGATGACATAGAATCTGGAACTCATCTAGTAAAACAGAAAGCCGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGTGGGCAGTGGAACTTCATCTGGTATGGTCGATTGGCTTCTCGAAGAGCTTCTTAAGGATAAGCTGCAGCTGTGGCTTTCTTGCAGGTCCCAGGAGAAAGATGAAGTAACAGGCTGTTGTTTGTCGAAGAAAGAGCAGGGAATCATTCATATGGTAGCTGGATTGGGTTTTGAGTGGGCCTTGCACCCTATTCTCAGTTGTGGTGTGAATATAAATTTCCGTGACATTAGCGGATGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGAGAAAAAATGGTTGCTTCACTTATAGCTTGTGGTGCATCCGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCGAAAGGCAAAACTGCTGCATCTATTGCAGCAAGCAGTGGACATAAGGGACTGGCAGGATATCTTTCTGAGAGAGCTCTGACAAGCCATCTGTCATCCCTCACGATGCAAGAGACTGAGCTATCCAAAAGTTCTGCACAACTCGAAGCAGATTTAGCTGTTTGTAGTGTCTCCAAGGAAAATCTCGCCGCCGGTGAGGATCAGGCTCCACTTAAACATACCTTGGCTGCTGTCAGAAATGCAACTCAGGCCGCAGCACGTATACAATCTGCTTTTCGTTCGCATTCCTTCAGAAAGCGGAGGGCAAGAGAAGCTGCTGCTGCCACTGCTGGTGGTATCAACGCAGGTAGCATTGGTAACATTCCGGAGCTTTCTGCTCTGTCAAAACTTGCCTTTCGGAACTCACGGGATCACAATTCTGCTGCCTTATCTATTCAGAAGAAATTCCGAGGTTGGAAGGGTCGCAAAGATTTCTTAGAATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGAAAGCATTACAAGGTGATATGGGCAGTTGGAATCTTGGACAAGGTTGTCCTGCGATGGCGGAGAAAAGGAGCTGGCCTACGAGGTTTCCGACAGGAGATGGAGACTAGTGCCTTGGATGAAAGTGAAGATGAAGATATTCTCAAGCCTTACCGCAAACAGATGGTAGATGCAGAAATAAAAGAGGCTGTGTCGAGGGTGCTTTCCATGGTTGATTCTCCAGATGCTCGTCAGCAATATCATCGCATGCTTGAGAAGTATCGTCAAGCTAAGGCTGAACTTGCGGGTACGAGTGAGGAAGCATCATTGTCAACGTCCATTGCGGATGTTTTCAGTATGGAAGATGATATGTATCAGTTTCCTCAGGGCTAA 2859 0.4498 MATGDDYNIDDLFREAQSRWLKPVEVMYILQNHDKYQFTQEPPQQPTSGSLFLFNRRVLRFFRRDGHNWRKKKDGRTVGEAHERLKVGTVEALNCYYAHGEQNPTFQRRSYWMLDPAYEHIVLVHYRETSEGRSSSGPGTQLSPSSSSAFGQSPSSYSAQTPLSTSVLGDPSEPNQSYSSSGTGEVTSDVFIMNDGMSHLDGTYADSGTSTEVEVTRALLRRLEEQLSLNEDSIKEIASFYSEKEITDEGDKSYELMDHTYRDGNEKDIWTEVLESCKSSSTARLPQKNIYMPAGEENSPSLSRKEPIANQDDGHWLNFNNSNNAENSVFSLPEGDSGVKYPPYSSVLGAQKANSEYYATLFAQSQIGPSLDADSSLTVSQKQKFSIKAVSPEWGYTTETTKIIIVGSFLCHPSDSAWACMFGDVEVPIEIIQDGVISCEAPSRLSGKVNLCITSGNRQSCSEVREFEYRNKTSICTYCNSSATEANRSPEELLLLVRFAQMLLSGSTTKNDDIESGTHLVKQKADDDSWSHIIEALLVGSGTSSGMVDWLLEELLKDKLQLWLSCRSQEKDEVTGCCLSKKEQGIIHMVAGLGFEWALHPILSCGVNINFRDISGWTALHWAARFGREKMVASLIACGASAGAVTDPSAQDPKGKTAASIAASSGHKGLAGYLSERALTSHLSSLTMQETELSKSSAQLEADLAVCSVSKENLAAGEDQAPLKHTLAAVRNATQAAARIQSAFRSHSFRKRRAREAAAATAGGINAGSIGNIPELSALSKLAFRNSRDHNSAALSIQKKFRGWKGRKDFLELRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMETSALDESEDEDILKPYRKQMVDAEIKEAVSRVLSMVDSPDARQQYHRMLEKYRQAKAELAGTSEEASLSTSIADVFSMEDDMYQFPQG 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04976 952 Pfam IPT/TIG domain 387 469 IPR002909 -
Aip03g04976 952 SMART ANK_2a 654 683 IPR002110 GO:0005515
Aip03g04976 952 SMART ANK_2a 615 644 IPR002110 GO:0005515
Aip03g04976 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 836 IPR027417 -
Aip03g04976 952 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Aip03g04976 952 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 254 946 - -
Aip03g04976 952 SUPERFAMILY E set domains 387 470 IPR014756 -
Aip03g04976 952 ProSiteProfiles Ankyrin repeat region circular profile. 615 641 - -
Aip03g04976 952 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Aip03g04976 952 ProSiteProfiles IQ motif profile. 813 838 IPR000048 GO:0005515
Aip03g04976 952 Coils Coil 909 929 - -
Aip03g04976 952 Pfam Ankyrin repeats (3 copies) 600 676 IPR002110 GO:0005515
Aip03g04976 952 ProSiteProfiles Ankyrin repeat profile. 615 647 IPR002110 GO:0005515
Aip03g04976 952 SMART CG_1_2 12 130 IPR005559 GO:0003677
Aip03g04976 952 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 254 946 - -
Aip03g04976 952 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 250 - -
Aip03g04976 952 SMART iq_5 789 811 IPR000048 GO:0005515
Aip03g04976 952 SMART iq_5 732 754 IPR000048 GO:0005515
Aip03g04976 952 SMART iq_5 812 834 IPR000048 GO:0005515
Aip03g04976 952 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 5 250 - -
Aip03g04976 952 Pfam IQ calmodulin-binding motif 792 810 IPR000048 GO:0005515
Aip03g04976 952 Pfam IQ calmodulin-binding motif 815 834 IPR000048 GO:0005515
Aip03g04976 952 MobiDBLite consensus disorder prediction 129 186 - -
Aip03g04976 952 ProSiteProfiles IQ motif profile. 733 762 IPR000048 GO:0005515
Aip03g04976 952 CDD IPT 386 470 - -
Aip03g04976 952 Gene3D Immunoglobulins 379 474 IPR013783 -
Aip03g04976 952 Gene3D - 790 838 - -
Aip03g04976 952 SUPERFAMILY Ankyrin repeat 583 677 IPR036770 -
Aip03g04976 952 ProSiteProfiles IQ motif profile. 790 819 IPR000048 GO:0005515
Aip03g04976 952 Gene3D - 501 687 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04976 Aip-Chr3 134433582 134438957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04976 270 950 CAMTA Transcription Factor Family AT1G67310 56.667 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Aip03g04976 CG-1 5.5e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04976 K21596 - gmx:100786880 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04976 03 134433582 134438957 Aip03g04976 03 134433582 134438957 ECH
Aip04g00181 04 2043763 2052176 Aip03g04976 03 134433582 134438957 PCT