Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04974 ATGAAACTGAAGAGTGGTTGGGTGAGGAGGGCTTTTTATTCATGGATTCTAGTTTGTACGTTGGGAGGTTTGTACGGGTTCTGGCGCATGAGCATACATGCTTGTGAGCAGAGGAAAGAAAGTCTAATAAGCATGTGTGATGAAAGAGCAAGGATGCTGCAGGATCAGTTCAATGTGAGCATGAACCATATACAAGCCATGTCCATTTTGATAAAAACCTTCCACCATAACATGAACCCCTCGGCCATTGATCAGAGCACTTTTGCTAGATACACTGAAAGAACCTCGTTTGAGAGGCCCCTCACAAGTGGTGTTGCATACGCTGTAAGAGTGCTCCATTCTCAAAGGGAACAGTTTGAGAAGCAACAAGGATGGACTATTAAGAAGATGGATACTTTGCAACCATCCCTTGTTCAAGAAGAATATGCTCCTGTCATCTTTGCACAAGATACAATTGCACATGTCATTTCTCTTGACGTGCTATCTGGAAAGGAAGACCGTGAGAATGTGCTCCGAGCAAGGGAGTCAGGCAAAGGAGTTTTAACTGCACCCTTTCGGCTTCTCAAAACGAATCGCCTTGGGGTAATCCTCACATTTGCTGTCTACAAGAGAAATCTTCCATCCAATTCAACCCTTGATCAGAGGATTCAAGCAACTGATGGATATCTTGGTGGAGTCTTTGATGTTGAGTCGTTAGTGGAGAAACTACTGCAACAACTTGCTAGTGAGAAAGCTGTAGTTGTTAATGTGTATGATACTACCAATAATACACATCCCATTGTCATGTACGGTTCAAATGTATCAAGGGACTCTTTCTCTCATGTCAGCACTCTTAACTTTGGAGACCCTCTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAAAAACTGCCATGGCCATGGTTGGCATTTAATACTTCTGTAGGAGGCTTTATTATTTGTGTCCTTCTTGGGTATATTTTCTATGCCACCTGCAATCGAGTTGTAAAAGCGGAAGAGGATCGGGATGAGATGACTGAGCTTAAAAAGCGAGCTGAGGCGGCTGATATTGCAAAATCCCAGTTTCTTGCTACTGTGTCCCACGAGATTAGAACACCAATGAATGGGGTTTTAGGGATGTTGCATATGCTTATGGACACGGATCTAGACGTAACCCAACAGGAGTATGTGAGAACGGCGCAGGGAAGTGGAAAAGCTTTGGTGTCACTTATAAACGAGGTATTGGATCAGGCAAAGATTGAAGCTGGTAAGCTGGAGCTTGAAGCTTCGCTGTTTGACTTGCGTGCTGTTTTGGATGATATATTATCATTATTTTCAGAAAAGTCTCAAGGAAAAGGAATAGAGTTGGCAGCTTATGTATCAGATGAGGTTCCTGAGCTGTTAATAGGTGATGCAGGAAGGTTTAGGCAAATAATTACCAATCTCATGGGTAATTCAATTAAGTTCACAGAGAAAGGGCATATTTATGTGACTGTCCATCTTGTTGAGGAGGTGGTCCATTCGATACAGATTGATAAAGAATTAGGCATGGAAAATGTAAATACCCTGAGTCTGAGTGGTTTCCCTGTTGCCGATAGTCGAAAAAGCTGGGAAGGCTTCAAAGCATTCAGTCAAGTAGGGCCTCTTGGTTCTTTCTCATCCTCTGTTACTGATGTAATCAATTTGATTGTATCGGTTGAGGACACTGGCGAAGGAATCCCTCTGGAAGCGCAGTCTCGAATCTTCACTCCGTTCATGCAGGTTGGTCCTTCCGTTTCCCGGAGACATGGTGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGTCTCATGAATGGCCAAATTGGATTTGTCAGCATACCTAAGATTGGATCCACCTTCACTTTCACTGCTCTCTTCACCAATTCAACTGATTGCAAAATTCAGCAACTCAACAACAACAGCAACCACTCTAATCCTCCATCTTCAGAATTTCAGGGAATGACCGCATTAACGGAAGGCAACCAGATTATCAATATGGTACTTATTGAGCAGGAAGTGTGGGATAGAGATTCAGCCATGTCATCTCGCTTTGTCGATGGCGCCAGTAGAGTAGTTCATCATGGCGTTCCTCCTAAGTTGTTCATTCTTGTTAATTCTAATGGTTGGACATCAGGTATTGGTAATCCCACTGTGATCGTAAAACCTCTGAGAGCAAGTATGCTTGCTGCCTCGCTGCAGCGAGCCATGGGTGTTACTTGCCGAAATGGGGAGCTTCCGGGTTTATCTGTTGGCCACCTTCTTGGCGGGAAGAAAATTCTAATTGTAGATGACAATGTTGTGAACCGCACCGTAGCAGCTGGTGCTTTGAAAAAGTATGGAGCAGATGTGGTGTGTGTTAGCAGCGGAAAAGAGGCCATCTCTAAACTAAAACCACCTCATGAGTTCGATGCGTGCTTCATGGATATTCAAATGCCAGAAATGGACGGTTTTGAAGCTACAAAGAAAATAAGGGAGATGGAACGTTGCGCCAAGAGAGAAGGTTTTGTAGATAACTTATCAAAATGGGATGTCCCTATTTTGGCCATGACTGCAGACGTGATCCAGGCCACCCATGAGGAGTGTGTAAGGTGTGGCATGGATGGATATGTTTCTAAACCGTTTGAAGCCGAACAGCTTTATCGAGAAGTCTCAAGGATAGTTAATAAATCTCAGCATATAAGTCGATATGTCCGAGTGGTTAAGGAGACAGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGCAATTTAAATTTTTTGCGATGCCATGTCAAAATTTCAAAACACCTCTACCAGGACAGCTCCATGCTCACCTTCGAAGGCCAGAAGATCCAGGGCGCCCAGAACATCGTCGCCAAGCTCACCTCTCTCCCTTTCAACCAGTGCCTTCACTCCATCACCACCGTTGACTGCCAGCCCTCCTCCGCCCCCAACGGCATGCTTGTCTTCGTCAGCGGCAATCTCCAGCTCGCCGGCGAGCAACACGCCCTCAAGTTCAGCCAGATGTTCCATTTGTTACCAACACCACAGGGAAGCTACTATGTTTCAAACGATATATTCCGGTTGAACTATGCTTGA 3102 0.4491 MKLKSGWVRRAFYSWILVCTLGGLYGFWRMSIHACEQRKESLISMCDERARMLQDQFNVSMNHIQAMSILIKTFHHNMNPSAIDQSTFARYTERTSFERPLTSGVAYAVRVLHSQREQFEKQQGWTIKKMDTLQPSLVQEEYAPVIFAQDTIAHVISLDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRNLPSNSTLDQRIQATDGYLGGVFDVESLVEKLLQQLASEKAVVVNVYDTTNNTHPIVMYGSNVSRDSFSHVSTLNFGDPLRKHEMHCRFKQKLPWPWLAFNTSVGGFIICVLLGYIFYATCNRVVKAEEDRDEMTELKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQGSGKALVSLINEVLDQAKIEAGKLELEASLFDLRAVLDDILSLFSEKSQGKGIELAAYVSDEVPELLIGDAGRFRQIITNLMGNSIKFTEKGHIYVTVHLVEEVVHSIQIDKELGMENVNTLSLSGFPVADSRKSWEGFKAFSQVGPLGSFSSSVTDVINLIVSVEDTGEGIPLEAQSRIFTPFMQVGPSVSRRHGGTGIGLSISKCLVGLMNGQIGFVSIPKIGSTFTFTALFTNSTDCKIQQLNNNSNHSNPPSSEFQGMTALTEGNQIINMVLIEQEVWDRDSAMSSRFVDGASRVVHHGVPPKLFILVNSNGWTSGIGNPTVIVKPLRASMLAASLQRAMGVTCRNGELPGLSVGHLLGGKKILIVDDNVVNRTVAAGALKKYGADVVCVSSGKEAISKLKPPHEFDACFMDIQMPEMDGFEATKKIREMERCAKREGFVDNLSKWDVPILAMTADVIQATHEECVRCGMDGYVSKPFEAEQLYREVSRIVNKSQHISRYVRVVKETDLKSVGLRPRRFEPCCRRNLNFLRCHVKISKHLYQDSSMLTFEGQKIQGAQNIVAKLTSLPFNQCLHSITTVDCQPSSAPNGMLVFVSGNLQLAGEQHALKFSQMFHLLPTPQGSYYVSNDIFRLNYA 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04974 1033 CDD REC_hyHK_CKI1_RcsC-like 761 885 - -
Aip03g04974 1033 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 659 - -
Aip03g04974 1033 PANTHER TWO-COMPONENT HISTIDINE KINASE 660 891 - -
Aip03g04974 1033 Coils Coil 328 351 - -
Aip03g04974 1033 CDD HisKA 351 412 IPR003661 GO:0000155|GO:0007165
Aip03g04974 1033 Gene3D - 415 632 IPR036890 -
Aip03g04974 1033 Pfam His Kinase A (phospho-acceptor) domain 351 416 IPR003661 GO:0000155|GO:0007165
Aip03g04974 1033 SMART CHASE_2 79 265 IPR006189 -
Aip03g04974 1033 PANTHER HISTIDINE KINASE 3 2 659 - -
Aip03g04974 1033 PANTHER HISTIDINE KINASE 3 660 891 - -
Aip03g04974 1033 SMART HisKA_10 351 416 IPR003661 GO:0000155|GO:0007165
Aip03g04974 1033 PRINTS Bacterial sensor protein C-terminal signature 573 583 IPR004358 GO:0016310|GO:0016772
Aip03g04974 1033 PRINTS Bacterial sensor protein C-terminal signature 590 608 IPR004358 GO:0016310|GO:0016772
Aip03g04974 1033 PRINTS Bacterial sensor protein C-terminal signature 555 569 IPR004358 GO:0016310|GO:0016772
Aip03g04974 1033 Gene3D - 30 82 - -
Aip03g04974 1033 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 405 625 IPR036890 -
Aip03g04974 1033 SMART REC_2 759 885 IPR001789 GO:0000160
Aip03g04974 1033 CDD NTF2 938 1032 IPR018222 -
Aip03g04974 1033 CDD HATPase_EvgS-ArcB-TorS-like 468 628 - -
Aip03g04974 1033 ProSiteProfiles Nuclear transport factor 2 domain profile. 938 1030 IPR018222 -
Aip03g04974 1033 Gene3D - 928 1033 - -
Aip03g04974 1033 SUPERFAMILY NTF2-like 937 1031 IPR032710 -
Aip03g04974 1033 Gene3D - 324 414 - -
Aip03g04974 1033 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 463 628 IPR003594 -
Aip03g04974 1033 SMART HKATPase_4 463 630 IPR003594 -
Aip03g04974 1033 Pfam CHASE domain 82 263 IPR006189 -
Aip03g04974 1033 Gene3D CHASE domain 83 297 IPR042240 -
Aip03g04974 1033 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 338 417 IPR036097 GO:0000155|GO:0007165
Aip03g04974 1033 Gene3D - 755 896 - -
Aip03g04974 1033 ProSiteProfiles Histidine kinase domain profile. 358 630 IPR005467 -
Aip03g04974 1033 Pfam Response regulator receiver domain 761 884 IPR001789 GO:0000160
Aip03g04974 1033 ProSiteProfiles CHASE domain profile. 79 290 IPR006189 -
Aip03g04974 1033 SUPERFAMILY CheY-like 758 903 IPR011006 -
Aip03g04974 1033 CDD PRTases_typeI 715 788 IPR000836 -
Aip03g04974 1033 ProSiteProfiles Response regulatory domain profile. 760 889 IPR001789 GO:0000160
Aip03g04974 1033 Pfam Nuclear transport factor 2 (NTF2) domain 938 1030 IPR002075 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04974 Aip-Chr3 134423206 134429921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04974 1 890 Miscellaneous Gene Families AT1G27320 63.608 0.0 1181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip03g04974 CHASE 1.6e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04974 K14489 - gmx:100776798 1321.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04974 03 134423206 134429921 Aip03g04974 03 134423206 134429921 ECH