Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04970 ATGAACCGTTCCCTTATTCGTATTGCTATTGCTGTTGTTAACTTGTTATTGTATTCATATGCTTCTTCAGTCCCTGTAATGGTAAAGGGACCAGCACTTTCCCTATGTACTTGCAAATACTACGCTAATCCTTTGCTAGATGGGTCATTCTCATTGGAGATCCATGAGATACACTTTAACACGAATCATTTTGTATTTGTATTGTTGTTTGTTGGGGTGGGGGGTCAAGATTCATTGGTTTTGGGTATTTATGATTCGGAGAAACTAACAGTAGAATTCTTTTGGATTGTGCCTNNGGAGTGGGAGCACCTGTTCTTCTCCAATGCAAAAGTAACCGAAAACCCCAAATTACAACCACCACCAGATTGGAGTGGTGAAGCAAATGGAGAAACCAATGTTGGGTTGTTGGACAATTCTGGTGGTAGTGGTTGCTCTGAGTCTGAGCTCATGAACCCATCTTCGTCAAGAAGCTCGAAATCTGCTTCCATCAATTCATCTTCCAATAGGGATAGCAAAACATCTATCTTCACCTTAGAAAGTTCCCAAGATGATTCCAGTGGTAAAAAAGAAGAGCTGGTTGAAAACTCTCATTCGCATGAGCCCCCTCCTGGCTCTGGCGAACCGTTGCTTACTCTAAAGCTTGGTAAACGCTTGTACTTTGAAGATGTTTGTCCGGGAAGTGATGCCAAGAAGAACCAGTCTTCCTCAGGTGCTCCGATTCAAGCTGTGAGTAGTGGAAAGAAATCTAAGTCCAATGCTCAGAACATGCAATATCCATGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTCTTGTCAGCTAAAGATTATCATCGCAAACATAGAGTTTGTGAAAGTCATTCCAAGTCTCCAAAGGTGGTTATTGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGAAAACAAAAGAAGCTGCAGACGGCGTCTTTCAGATCACAATGCACGGCGCCGGAAACCTCATCCTGAAACTGTCCAGTTAAATCCATCAGATTTGACTCCCTCGCCTTTTGCAGTTGGGAGGCAACAGATTAGCCCCTTCACTTATACAACGAGCGGAGCCGCGACCGCGAATACAGTTTGGCAAGACATGCGGCGGAGCAAGCAGCTCCCCCAGACGAAAGATTTTCTGTTGAAGGCTGTGAAAGGCAACAATGAGATACCAAGTATTGTGAGCATGGTGACAGAGGATGATTCCAAAGGCATTGCATTTGCAAGCAAGACTCTTATACTTTTAACAGATTGA 1290 0.4411 MNRSLIRIAIAVVNLLLYSYASSVPVMVKGPALSLCTCKYYANPLLDGSFSLEIHEIHFNTNHFVFVLLFVGVGGQDSLVLGIYDSEKLTVEFFWIVPXEWEHLFFSNAKVTENPKLQPPPDWSGEANGETNVGLLDNSGGSGCSESELMNPSSSRSSKSASINSSSNRDSKTSIFTLESSQDDSSGKKEELVENSHSHEPPPGSGEPLLTLKLGKRLYFEDVCPGSDAKKNQSSSGAPIQAVSSGKKSKSNAQNMQYPCCQVEGCGLDLLSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPHPETVQLNPSDLTPSPFAVGRQQISPFTYTTSGAATANTVWQDMRRSKQLPQTKDFLLKAVKGNNEIPSIVSMVTEDDSKGIAFASKTLILLTD 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04970 429 MobiDBLite consensus disorder prediction 131 182 - -
Aip03g04970 429 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 110 415 IPR044817 GO:0003677
Aip03g04970 429 MobiDBLite consensus disorder prediction 116 211 - -
Aip03g04970 429 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 110 415 - -
Aip03g04970 429 SUPERFAMILY SBT domain 259 340 IPR036893 GO:0003677|GO:0005634
Aip03g04970 429 MobiDBLite consensus disorder prediction 230 251 - -
Aip03g04970 429 Pfam SBP domain 261 334 IPR004333 GO:0003677
Aip03g04970 429 Gene3D - 251 322 IPR036893 GO:0003677|GO:0005634
Aip03g04970 429 MobiDBLite consensus disorder prediction 183 197 - -
Aip03g04970 429 ProSiteProfiles Zinc finger SBP-type profile. 258 335 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04970 Aip-Chr3 134372468 134375816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04970 98 336 SBP-box Gene Family AT1G27370 48.971 1.10e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip03g04970 SBP 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04970 - - ahf:112792599 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04970 03 134372468 134375816 Aip03g04970 03 134372468 134375816 ECH