Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04951 ATGGATGTAGCTGAGTATGAGGAAAAACAGTTTTCAGCAAGTGATGCCAAGTTACATGGACAGATGTGCAAGGCGCTTTCTCTGATATATTGCAAAATATTGTCGGTATTTCCTTCCTTGGAAGCAGCTCGGCCTAGGAGCAAATCTGGAATTCAAGCATTATGTTCTCTGCACATGGCCATAGAGAAGACTAAAAACATTCTTCAGCACTGCACAGAATGTAGTAAACTTTACCTGGCTATAACTGCAGATTCTATTCTTCTAAAATTTGAGAGGGCTAAATGTTCTCTCAAAGATGGTCTTAAACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGATTCAGGAGATTGTCAATGAACTTGCAAGTGTGTCATTTGCACTTGATCCATCAGAGAAGAAAATTGGTGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAATGACTCTAATGACAGCAATGAACTTGAATCTTTTCATCAGGCTGCTAGCAGGCTTGGAATTACATCTTCTAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAGGTCATAGAAAGGGCTCGGGCAGAGGAAGACAAGCGGAAGGAATCAATTGTTGCTTATCTTTTGCATCTTATGAAGAAATACTCAAAATTATTTAGAAATGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATCCATTGAGGATGGTGTTCCCGGTGTTCATTGTCAGGCCTTTGACAGACAGTTTTCTAAACTTGGTTCCTTTTGTTTTAAGCCAAATGATATGAAATCAGAGCACATGCCCCTTCCCCCTGAAGAGCTAAGGTGCCCAATATCTTTGCAACTTATGTACGATCCTGTAATCATTGCTTCTGGGCAAACTTACGAAAGGTTATGTATAGAAAAATGGTTTAGTGATGGCCACAGCACTTGCCCAAAGACCCAACAGAAGCTCACACATCTCTGTTTGACTCCTAATTACTGTGTGAAAGGTCTTGTTGCTAGTTGGTGTGAACAGAATGGAGTTAATATTCCCGAAGGCCCTCCTGAATCTCTTGATCTTAATTACTGGAGATTGGCATTCAATGAGTCTGAATCCACAAATTCAAGATCTGCAAACAGTGTCAGCTCTTGCAAGTTGAAGGGTATTAAAGTGGTTCCATTAGAAGAAAGGGGTACCTTTGAGGAAATTGGGGGAAATAGGGCTGAAAGTGTGTCTACACAAGAGGAAGATATTGCACAGTACTTAAGTCTTCTGGAAATCTTGACTGAGGCTAATAGTTTGAAGAGGAAATGTAAAGTGGTTGAACGATTAAGGCTGTTGCTGAAGGATGATGAAGAAGCAAGGATTTTTATGGGGGCTAATGGCTTCGTTGAAGTACTTTTGCGGTTTTTACAATCAGCTGTGCGTGAAGGAAATTTGATGGCTCAGGAGCATGGAGCAATGGCTCTTTTCAACCTGGCTGTAAATAATGACAGAAATAAGGAAATCATGTTGGCGGCAGGAGTATTATCATTGTTGGAGGAAATGGTTTCAAATACTCCTTCGTATGGTTGTGCAACTGCCTTATACGTGAATCTATCTTCCCTTGAAGAGGCCAAGCGTTTGATTGGTGTGAGTCAGGCTGTTCAGTTCTTAATCGAGCTTCTTCAAGCTGACACTGATATTCAATGCAAGCAGGATTCTCTCCATGCTCTCTATAATCTTTCCACTGTAACCTCCAACATTCCTTACCTCCTTTCATCCGGCATCGTTGGCGGCCTACAAATTCTTCTTGTGGACCAGGGCGATTGTAGTTGGATAGAAAAATGTATAGCTATTTTGATAAATTTGGCTTCTTCCCAAGATGGGATGGAGGAAATGTTATCGACTCCAGGAATTATAGGCGCATTAGCTTCAATATTGGACACAGGCGAGCTCCTAGAGCAGGAGCAAGCTGTCTCTTGCCTCCTGCTTCTATGCAATAGAAGTGAGAAATGTTGTGAGATGGTGCTACAAGAAGGTGTCATCCCTGCATTGGTTTCAATATCAGTGAATGGAAATCCAAGAGGGAGAGATAAAGCTCAGAAACTCCTGATGTTGTTTCGAGAGCAGCGGCAACGAGACCATCCGCCAGTGCAAGCTGACGCACATCATTGCCCTCCTGAAACTAGCGATTTGTCAATGCCGCCTTCTGAAATGAAGCCGCAATGCAAGTCAATGTCTAGAAGTAAGACAGGGAAAGCTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTCTACCAGTGTTAA 2301 0.4211 MDVAEYEEKQFSASDAKLHGQMCKALSLIYCKILSVFPSLEAARPRSKSGIQALCSLHMAIEKTKNILQHCTECSKLYLAITADSILLKFERAKCSLKDGLKRVEDIVPQSIGCQIQEIVNELASVSFALDPSEKKIGDDLIALLQQGRKFNDSNDSNELESFHQAASRLGITSSRAALAERRALKKVIERARAEEDKRKESIVAYLLHLMKKYSKLFRNEFSDDNDSQGSAPCSPTVQGSIEDGVPGVHCQAFDRQFSKLGSFCFKPNDMKSEHMPLPPEELRCPISLQLMYDPVIIASGQTYERLCIEKWFSDGHSTCPKTQQKLTHLCLTPNYCVKGLVASWCEQNGVNIPEGPPESLDLNYWRLAFNESESTNSRSANSVSSCKLKGIKVVPLEERGTFEEIGGNRAESVSTQEEDIAQYLSLLEILTEANSLKRKCKVVERLRLLLKDDEEARIFMGANGFVEVLLRFLQSAVREGNLMAQEHGAMALFNLAVNNDRNKEIMLAAGVLSLLEEMVSNTPSYGCATALYVNLSSLEEAKRLIGVSQAVQFLIELLQADTDIQCKQDSLHALYNLSTVTSNIPYLLSSGIVGGLQILLVDQGDCSWIEKCIAILINLASSQDGMEEMLSTPGIIGALASILDTGELLEQEQAVSCLLLLCNRSEKCCEMVLQEGVIPALVSISVNGNPRGRDKAQKLLMLFREQRQRDHPPVQADAHHCPPETSDLSMPPSEMKPQCKSMSRSKTGKAFSFFWKSKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04951 766 SUPERFAMILY RING/U-box 273 354 - -
Aip03g04951 766 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Aip03g04951 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Aip03g04951 766 CDD RING-Ubox_PUB 283 325 IPR045210 -
Aip03g04951 766 Coils Coil 175 195 - -
Aip03g04951 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 758 - -
Aip03g04951 766 SUPERFAMILY ARM repeat 427 704 IPR016024 -
Aip03g04951 766 MobiDBLite consensus disorder prediction 712 742 - -
Aip03g04951 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Aip03g04951 766 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Aip03g04951 766 Gene3D - 531 705 IPR011989 -
Aip03g04951 766 PANTHER U BOX DOMAIN-CONTAINING 1 758 - -
Aip03g04951 766 Gene3D - 414 530 IPR011989 -
Aip03g04951 766 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04951 Aip-Chr3 134099606 134104407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04951 1 765 U-box Gene Family AT1G24330 65.128 0.0 1015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04951 - - gmx:100794099 1206.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01024 10 13522469 13527499 Aip03g04951 03 134099606 134104407 PCT