Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04941 ATGGACTCCGATTCTGACTCTGACGGATCCCATGTCTCTGCAACCCCTCCACGACGAGCAACTCCATCACCGCCGCCACCACAACCTCCGCCGCCGCCACAACCACCTCGTGTTCCTTCCGGAAAATCTAGAATCAGAACCAAAACCTCGAGCTCCAAGAAGCGCCCTTCTGCACCCGATAAAACCCAATCCAAACACGATCCGCTACCCGAACCAACCCACCAACTCCAAGACTCTTTCTCCCTCCCGACCGCTCTACCGTTTCAAATTCGTCGGTCCTCCGAGTGTGACCCCACACCCCCTTCCACTTCCCAGCCCCTCGAAACCCTCCCGGCGGGGTTCTTCTCCAAATCCGCTTCCTTCTCGAAGATCCGAAGACATTCTATAAGTTTTGAAGCTTCTGGAAACGAACCGCTACTCAATTCTACGTCCAATCTGGGCACCAATGTTGGACTTGATTATGCTCTAAAGGGGACATCCGGGAAGAGGCAGCATCCTAACCTGATAGGGGCAAATGCACCATTGCCAGCCGTGAAGCTGCGAAAATGTGGTGGGGAAGGGAACTTTGTGAAATTGAACTTGAGTGGTGGTGGTAAGAGGAGGAAGTTTATGAACAAGGGGTACAAGAAAAGTGGGAGATTTTCTGGCGGTAGAAGGTACACAAGAAGAAGTAGAGGTAAAGTGGGACGTCAAGGGAAGGAGGATCAAGAGGAACTTGGTTTTGATGATGAAGAAGGGTTGGTTACAGAGAGTGGACAAAAGAAGCAAAAGCGGACTTGCAGAGCTAGTGAGGTTCAGTTGAAATTGGTGGACGAGGCAGTGTCTGCTGCTCAAGCTGAGCCTTCGGATGAGAATTTGGTGAACTTGCTGAGCTTGGTTTATGGCTATGATAGTTTTCGAGATGGGCAGCTGGAGGCAATCAAGATGGTTCTTACCGGGAAGTCTACCATGCTTATTTTGCCAACTGGTGCAGGGAAGTCACTCTGCTATCAGCTGCCTGCCTTGATTTTGCCTGGGATTACCCTAGTTGTCAGTCCATTGGTGGCCTTGATGATTGATCAGCTAAGGCAACTGCCCCCTGTGATTAGGGGTGGTTGTTTAAGCAGCAGTCAGACATCTGAGGAAGCAGCTGAAACACTGAACCAGCTTAGACAAGGTGCAGTGAAGGTGCTTTTTGTTTCCCCAGAGCGCTTCCTAAATGAGGAGTTTCTGTCTGTTATTTCTGGTATGTCAGGCATCTCACTTCTTGTTGTTGACGAAGCACACTGTATTTCTGAATGGTCTCACAATTTCCGACCATCATTCATGAGACTTAGAGCATCTTTGCTCCGTAAAAGGCTTAACATAGGTACTATTCTTGCAATGACAGCAACTGCTACAAACACAACTTTAGATGCCATCATGTCTGCTCTAAATATTCCTTGCACAAATCTTATTCAAAAGGCACAACTAAGGGACAATTTTCATTTATCGGTGTCTTTGCTGAAAAATAGAATGAAAGACCTTCTGGTTCTCATGAAGTCTTCTCCTTTTGCCGAAGTTCAAAGCATTATCATATACTGCAAATTTCAGTCTGAAACTGATATGATTAGCCGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATGGTGGTATGAGTTCAAAGGAACGCAACTATGTCCAAGAGTTGTTTACCTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTGGATAAAAGTGATGTTGGAGCTGTAATTCATTATAGTCTCCCTAAAAGTCTGGAGGAGTATGTGCAGGAGATAGGCCGTGCTGGAAGGGATGGGAGGTTGTCCTATTGTCACCTATTCTATGATGATGAAACATATTTCAAACTTCGCAGTCTAATGTACAGGTAA 1899 0.4655 MDSDSDSDGSHVSATPPRRATPSPPPPQPPPPPQPPRVPSGKSRIRTKTSSSKKRPSAPDKTQSKHDPLPEPTHQLQDSFSLPTALPFQIRRSSECDPTPPSTSQPLETLPAGFFSKSASFSKIRRHSISFEASGNEPLLNSTSNLGTNVGLDYALKGTSGKRQHPNLIGANAPLPAVKLRKCGGEGNFVKLNLSGGGKRRKFMNKGYKKSGRFSGGRRYTRRSRGKVGRQGKEDQEELGFDDEEGLVTESGQKKQKRTCRASEVQLKLVDEAVSAAQAEPSDENLVNLLSLVYGYDSFRDGQLEAIKMVLTGKSTMLILPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPPVIRGGCLSSSQTSEEAAETLNQLRQGAVKVLFVSPERFLNEEFLSVISGMSGISLLVVDEAHCISEWSHNFRPSFMRLRASLLRKRLNIGTILAMTATATNTTLDAIMSALNIPCTNLIQKAQLRDNFHLSVSLLKNRMKDLLVLMKSSPFAEVQSIIIYCKFQSETDMISRYLNDNNISAKSYHGGMSSKERNYVQELFTSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPKSLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLMYR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04941 632 MobiDBLite consensus disorder prediction 53 72 - -
Aip03g04941 632 CDD SF2_C_RecQ 485 618 - -
Aip03g04941 632 Coils Coil 630 632 - -
Aip03g04941 632 Gene3D - 254 476 IPR027417 -
Aip03g04941 632 Gene3D - 477 632 IPR027417 -
Aip03g04941 632 PANTHER ATP-DEPENDENT DNA HELICASE Q4 62 618 - -
Aip03g04941 632 MobiDBLite consensus disorder prediction 18 39 - -
Aip03g04941 632 SMART helicmild6 528 609 IPR001650 -
Aip03g04941 632 MobiDBLite consensus disorder prediction 212 241 - -
Aip03g04941 632 Pfam Helicase conserved C-terminal domain 514 608 IPR001650 -
Aip03g04941 632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 632 IPR001650 -
Aip03g04941 632 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 289 630 IPR004589 GO:0004386|GO:0006310
Aip03g04941 632 MobiDBLite consensus disorder prediction 212 226 - -
Aip03g04941 632 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 414 423 IPR002464 -
Aip03g04941 632 MobiDBLite consensus disorder prediction 1 85 - -
Aip03g04941 632 PANTHER DNA HELICASE RECQ FAMILY MEMBER 62 618 - -
Aip03g04941 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 627 IPR027417 -
Aip03g04941 632 CDD DEXHc_RecQ4-like 287 480 - -
Aip03g04941 632 Pfam DEAD/DEAH box helicase 301 463 IPR011545 GO:0003676|GO:0005524
Aip03g04941 632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 307 477 IPR014001 -
Aip03g04941 632 SMART ultradead3 295 491 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04941 Aip-Chr3 134023808 134027084 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04941 518 610 Eukaryotic Initiation Factors Gene Family AT3G19760 36.559 2.26e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04941 K10730 - gmx:100811214 705.671