Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04934 ATGTACTTGTCGGAAAAACCCCGACCCATAGATTTCTATAAGGAAGAAAGCAGCACGCGTGACATGATCATCGAGGTCGTCTCCAACGGCGCGGCGGACCTACCTCCTCCGCCGTCCCACCAGCAGCAGCAGATGATCCTGGGTGACAGCAGCGGCGGCGAAGACCCTGAGGTTGAGATCAAGGCGCCAAAGAAGCGCGCGGAGACGTGGGTCCACGAAGAGACTCGAACCCTGATCGCGCTCCGGCGAGAAATGGACGCCCTTTTCAACACTTCTAAGTCCAACAAGCACTTGTGGGAGCAGATTTCTTCGAAGATGAGGGATAAGGGTTTCGATCGCTCGCCGACCATGTGCACCGACAAGTGGAGGAACCTCTTGAAGGAGTTCAAGAAGGCCAAGCACAATGATGGCGCAGGAGGAGGTGGCGGCGGCGGCGGAGGGAGTGGCTCCGCGAAGATGTCGTATTACAAGGAGATTGAGGAGATTTTGAGGGATAGGAGCAAGTGCGTGCAGTATAAGAGCCCCACTCCTCCACCGCCTCCATCATCTAATCACAAAGTTGAATCTTTCATGCAATTCACTGATAAAGGTATTGAGGATACCAGCATCTCTTTTGGTCCAGTTGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGACGTTTGGATCATGATGGGCATCCCCTTGCCATTACAACAGCTGAGGCTGTCGCAGCTAGTGGCGTTCCTCCCTGGAATTGGAGAGAAACTCCTGGAAATGGTGAAGAGGGCCAGTCATGTTGTGGAAGGGTTATATCTGTCAAATGGGGTGATTATACGAGAAGAATAGGTATTGACGGTGCTTCAGAAGCCATCAAGGAGGCCATAAGAGCTGCTTTCCGACTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGACCAGATAATCAGAAGTCTTGACCGTGACATGCCTTTAGGAAATTATACTCTTCACCTTGATGAAGGAATGGCCATTAAAGTGTGTCTTTATGACGAGTCTGACCATATCCCTGTGCATACTGAAGAGAAGATCTTCTATACAGAAGATGATTATCGTGATTTTTTGACTCGCCGGGGTTGGACATCTCTAAGAGAATTTGACGGCTATAGGAATATTGATAACATGGATGATCTTCGACCCGGTGCCATATACAGGGGTGTGACTTGA 1188 0.4992 MYLSEKPRPIDFYKEESSTRDMIIEVVSNGAADLPPPPSHQQQQMILGDSSGGEDPEVEIKAPKKRAETWVHEETRTLIALRREMDALFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHNDGAGGGGGGGGGSGSAKMSYYKEIEEILRDRSKCVQYKSPTPPPPPSSNHKVESFMQFTDKGIEDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTAEAVAASGVPPWNWRETPGNGEEGQSCCGRVISVKWGDYTRRIGIDGASEAIKEAIRAAFRLRTKRAFWLEDEDQIIRSLDRDMPLGNYTLHLDEGMAIKVCLYDESDHIPVHTEEKIFYTEDDYRDFLTRRGWTSLREFDGYRNIDNMDDLRPGAIYRGVT 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04934 395 CDD GT1 68 133 - -
Aip03g04934 395 MobiDBLite consensus disorder prediction 35 49 - -
Aip03g04934 395 PANTHER - 5 394 - -
Aip03g04934 395 Pfam Myb/SANT-like DNA-binding domain 69 162 IPR044822 -
Aip03g04934 395 SMART sant 66 128 IPR001005 -
Aip03g04934 395 SUPERFAMILY Homeodomain-like 66 127 IPR009057 -
Aip03g04934 395 Gene3D - 70 132 - -
Aip03g04934 395 MobiDBLite consensus disorder prediction 30 66 - -
Aip03g04934 395 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 394 - -
Aip03g04934 395 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04934 Aip-Chr3 133945030 133948656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04934 22 394 Trihelix Transcription Factor Family AT3G25990 70.400 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip03g04934 Myb_DNA-bind_4 3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04934 - - aip:107632016 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04934 03 133945030 133948656 Aip03g04934 03 133945030 133948656 ECH