Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04925 ATGGATAATAATGGTTGCTTGCCATGTACACGTCGTGAAGGTTTTCCAGCTGGACTGAGAGTTCTGGTTGTTGATGATGATCCAACATGGCTTAAGATCCTTGAAAAGATGCTCAAGAAGTGCTCTTACCAAGTGACTACATGTTGTTTGGCAACGGAGGCTCTGAAGAAGCTTCGAGAGAGGAAAGATGCATTCGACATAGTGATCAGCGATGTAAACATGCCTGACATGAATGGATTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTGCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTAATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAGCATGTCTTGAGAAAAAGGATTCATGAAGGGAGAGAGTTTGAAAGCCTAGAGGGCTTTGATTTTGAGGGCATTCATCACTTGATGAGAAATGGACAAGATCAATGTTGTGATGATGTGAGCCTCTTTGCATTAGAAGATTGTATCAGTTCAACAAGGAAAAGGAAAGATGCAGATAACAAACACGACGAAAGAGAATTCGGAGATTCTTCTTCAACCAAGAAAGCTAGAGTGGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCCAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTACCATGGCTTACCAGAGAAAATGTTGCTAGTCATTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAGAAGCAGAGAGATCAGAAGAAATGCTCCTCAAGTGGAATAAAGAATCCGGATTTGAATCCGAAAGATCCCGGAAGCTCTAGTATTAAGAACTCTATGAACAAGCAACAAAATGTAGTTTCAATTGACGGCTTCAGATGTCCAAATAATGGATTAGTGCAACTTCATGAATCTGATTTCACTGTGTCAGAGCTTAATAAAACAGAACAAAGAAGAGCACTAGCTACTAATAACATTATTCCGGATCCAAACATGACAAAGGTTTCACAGATAGTCCTTAATCAAACCTTTTCACCTCTCAATTCAGAAGGAAACATTGAAGTATTTGATTGCACCATACCAACACAGTACACTTGGAATCAAGTCCCCAAAAGGAAACTCCAAGATGATCCTAAATCACAATCAATTGCTTCAATGGTATCCAGTCCCTCTGCTGCAAGCTCAATAGCTTCTTCTGCAGTTGACAACATTATTCCGGTTCAGTCCAAAAGCCTTATGGTGAATGATCAATCTTCAGTCACTTCAAATCCGGGCTTGAAAACACAGGAATTTGATGCCAGTCTCATTCCTGAACTGGAATTTTACCAGCAAAACCTACTCTGGGGTGGCGAGGCGGCTTTTTCGCCTTTGGAGGAGGACTTGAATTTCTTTTTGCTACAAAGTGAATGCTACAATGACATGAACTTTGGTATGCACAACATAGACACGTCAGACTATTATTACGATCCAGGGCTTATTGCTGATGTTCCAAACCATTTATTATACGATTCAGCAGATTATTCAGTAGTAGATCAAAGTCTATTCATAGCATGA 1605 0.4025 MDNNGCLPCTRREGFPAGLRVLVVDDDPTWLKILEKMLKKCSYQVTTCCLATEALKKLRERKDAFDIVISDVNMPDMNGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEGREFESLEGFDFEGIHHLMRNGQDQCCDDVSLFALEDCISSTRKRKDADNKHDEREFGDSSSTKKARVVWSVDLHQKFVQAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKQRDQKKCSSSGIKNPDLNPKDPGSSSIKNSMNKQQNVVSIDGFRCPNNGLVQLHESDFTVSELNKTEQRRALATNNIIPDPNMTKVSQIVLNQTFSPLNSEGNIEVFDCTIPTQYTWNQVPKRKLQDDPKSQSIASMVSSPSAASSIASSAVDNIIPVQSKSLMVNDQSSVTSNPGLKTQEFDASLIPELEFYQQNLLWGGEAAFSPLEEDLNFFLLQSECYNDMNFGMHNIDTSDYYYDPGLIADVPNHLLYDSADYSVVDQSLFIA 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04925 534 SMART REC_2 19 131 IPR001789 GO:0000160
Aip03g04925 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 396 IPR045279 GO:0009736
Aip03g04925 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 410 506 IPR045279 GO:0009736
Aip03g04925 534 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Aip03g04925 534 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Aip03g04925 534 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
Aip03g04925 534 Gene3D - 202 270 - -
Aip03g04925 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 396 - -
Aip03g04925 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 410 506 - -
Aip03g04925 534 SUPERFAMILY Homeodomain-like 204 263 IPR009057 -
Aip03g04925 534 SUPERFAMILY CheY-like 18 143 IPR011006 -
Aip03g04925 534 CDD REC_typeB_ARR-like 21 135 - -
Aip03g04925 534 PIRSF RR_ARR_type-B 2 501 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aip03g04925 534 Gene3D - 19 167 - -
Aip03g04925 534 MobiDBLite consensus disorder prediction 276 297 - -
Aip03g04925 534 MobiDBLite consensus disorder prediction 270 297 - -
Aip03g04925 534 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04925 Aip-Chr3 133841403 133843681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04925 15 271 Response Regulator Gene Family AT2G25180 54.545 1.45e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aip03g04925 Response_reg 1.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04925 - K14491 gmx:100806394 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01087 10 14704971 14708622 Aip03g04925 03 133841403 133843681 PCT