Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04924 ATGGTGCAAATACAATCCAATAGTTCTTTCAGAGAATCTCTCAAGGCTCTTGAAGATGATATCCAACATGCCAACACACTGGCATCAGCACTCCCTAGAGATTATAATGGGAGCTATATCCAAATGAAATTATGTTACAGCCCTTTTGCTCCTCTTTTCTTGTCATTGATTGAGTGGTTGGATTTTAGTTGCACAGATGATATTCCCCATTGTTTGGGATTACTCCACATTCTTATATCCAATGTATACATTGATGGAATGCCATCTATTTCCTCAAAAGAAAGGATAGCCTCTCTAAGAGAATTCTATGCTGTAATATACCCTTCGCTCCGATTACTCGAAGGCGAGTTCAATGTGTCCAGAATCAGAGACCACAGAAGCAATTGCAGCCAAATTGTGAGCAGAAAAAGGCTTGAAAAGTTTCTTGATGAAGACCAAGAGGGAGATGATGAATGTGACATATGCATGGAGAAGAGCAGGAAGATGGTGCTTCCTAATTGTGTGCATTCCTTGTGCATTAGCTGCTTCCATGATTGGTATTTGAGATCAGAATCATGTCCATTTTGCCGTGGAAGCCTCAAAAGGGTTAGTTCTACAGATTTATGGGAGGTTATTGGAGACAGTGATGTAATTGACCGAGCTACACTTGCAATGGATAATATAAGACGTTTCTACCTTTTCATGGAAACTTTGACACTTAATATCCCTGATGCACATGTCTATGCATTTAACTACATGTTATGA 744 0.3952 MVQIQSNSSFRESLKALEDDIQHANTLASALPRDYNGSYIQMKLCYSPFAPLFLSLIEWLDFSCTDDIPHCLGLLHILISNVYIDGMPSISSKERIASLREFYAVIYPSLRLLEGEFNVSRIRDHRSNCSQIVSRKRLEKFLDEDQEGDDECDICMEKSRKMVLPNCVHSLCISCFHDWYLRSESCPFCRGSLKRVSSTDLWEVIGDSDVIDRATLAMDNIRRFYLFMETLTLNIPDAHVYAFNYML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04924 247 Pfam Zinc finger, C3HC4 type (RING finger) 149 195 - -
Aip03g04924 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 201 IPR013083 -
Aip03g04924 247 PANTHER RING FINGER PROTEIN 41, 151 6 247 - -
Aip03g04924 247 SUPERFAMILY RING/U-box 139 195 - -
Aip03g04924 247 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 6 247 - -
Aip03g04924 247 SMART ring_2 152 189 IPR001841 -
Aip03g04924 247 ProSiteProfiles Zinc finger RING-type profile. 152 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04924 Aip-Chr3 133835635 133837187 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04924 143 194 C3H Transcription Factor Family AT5G01960 34.615 1.73e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04924 - - adu:107481966 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04924 03 133835635 133837187 Aip03g04924 03 133835635 133837187 ECH