Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04921 ATGGGTCGCCGTAAGATCGAGATTAAGATGGTGAAAGACACCAACACAAGGCAGGTCACATTCTCCAAACGAAGAACCGGTCTTTTCAAGAAAGCCAACGAACTTTCTATTCTCTGCGGATCCGAGGTTGCTATTGTGGTCTTCTCTCCGGGAAACAAGCCTTACTCCTTCGCCCACCCCACCGTCGACGCTGTCGTCGCCAAGTTCCTCATCCAAAACCCTGAGCGGCGTGGTGGAGGCGATGATGACGAGGACAGCAGCGATGATAATGATGGTGGTGCTGATCCAGACACCTTGGACCATTTGTTCAAGGAGACTGTGGAACAGGTGCGCGTGGAGGAAAAAGTGGGCGCGGCGCGTGAAAAGGCTATCAAAGAGGTTGTTGAGGGAGGGAAGAAATGGTGTGAGATTGGTGAATTGAGTGAACTGAAAAGGAGGGTGAGGGAGCGTCTTACTATGTTGGAGACAGTTGAGTCCATGATGCTTCTTTCACATGAACCTGTGGTGATGGGAACCACT 519 0.5125 MGRRKIEIKMVKDTNTRQVTFSKRRTGLFKKANELSILCGSEVAIVVFSPGNKPYSFAHPTVDAVVAKFLIQNPERRGGGDDDEDSSDDNDGGADPDTLDHLFKETVEQVRVEEKVGAAREKAIKEVVEGGKKWCEIGELSELKRRVRERLTMLETVESMMLLSHEPVVMGTT 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04921 173 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Aip03g04921 173 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Aip03g04921 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Aip03g04921 173 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Aip03g04921 173 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip03g04921 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip03g04921 173 PANTHER MADS BOX PROTEIN 2 170 - -
Aip03g04921 173 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 170 - -
Aip03g04921 173 MobiDBLite consensus disorder prediction 74 99 - -
Aip03g04921 173 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip03g04921 173 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip03g04921 173 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04921 Aip-Chr3 133796231 133796749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04921 1 164 Type I MADS-box Gene Family AT2G34440 41.209 8.25e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip03g04921 SRF-TF 4.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04921 - - adu:107481967 306.99