Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04914 ATGAAGCTTTCTTCAGCTGATTTTTGTCCTCCACCCCCGGAAGGAGAAAAGCGCGTTTTGGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCAATTGTTGGAAGCCGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCAACCAACAGGGAAGTGGATGCCCAAATTCCTAACTATCCAAGCTTGCCTCCCCAACTTATCTGTCAACTTCATAATGTGACTATGCATGCTGATATTGAGACAGATGAAGTATATGCACAAATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTCCAAGTAAACAGCCTACAAACTACTTTTGCAAAACTTTGACAGCCAGTGACACAAGCACGCATGGAGGGTTCTCTGTTCCTCGCCGTGCAGCTGAAAAAGTGTTTCCTCCTTTGGACTTCACCCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGCGGCCAACCCAAAAGGCATCTATTGACAACGGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGCCGTGCTAATCGGCCACAACCTGTGATGCCTTCCTCAGTTTTGTCTAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACCAATAGTCGATTCACCATTTTCTATAACCCACGTGCTTGCCCATCAGACTTTGTCATACCCTTGGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTCTCAGTTGGCATGCGCTTCAGAATGCTGTTTGAAACAGAGGAATCTAGTGTGCGGCGATACATGGGCACCATAACTGGTATTAGTGACTTGGATCCTGTTCGATGGCAAAATTCACATTGGCGTTCGGTCAAGGTTGGCTGGGATGAGTCTACTGCTGGAGAGAAGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCCTTAACAACATTTCCTATGTATCCATCTCCGTTTCCTCTTAGGCTTAAAAGACCATGGCCTTCAGGACTTCCTTCTTTCTATGGCATGAAGGAGGATGATTTCGGCATAAATTCTTCACTAATGTGGCTTAGAGATGCTGATAGAGGGCTACAGTCTCTTAATTTTCAGGGTACCGGTGTAAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCCATGTTGAATTTGCAAACAGATCTGTACCAAGCTATGGCTGCCACTGCGCTTCAGGATATGAGGACTTTAGACCCTACCAAACAGCATCCAACTTCCTTAATTCAGTTTCAGCAACCCCAGAACTTCCCTAACCGGACGGGTGCTTTAATGCAGACACCAATGTTGCAGCCCTCTCAACATCAGCAGGCCTTCCCAAATAATCAAGAAATTCAGCATCCATCTCAATCTCAGGTTCAAATTCAAAATCATCTTCAGCAGCATCTACAGAATCAGCACTTATTCAACAATCAGAGTCATCAGCAGCAGCAACCACAGCTTCAACAGCAGCAGCAGCAGCAGCACCACCAACAACAAATGGTAGATCATCAGGAGATTCCAAATGTGGTCTCTACAATGTCTCAGTTCGTTTCCACTCCGCAGTCTCAGTCGTTACCCATGCAGGCTATCTCTTCACTGTGCCATCAGCAAAGTTTTACTGATTCAAATGGTACTGCTGCTGTTTCTCCGCTACACAGTATCTTGGGTTCATTTCCCCAGGATGAAACATCCCACCTTGTGAACCTTGCTAGAACTTCCTCTTGGGTTCCTGTTCAATCTTCATCTGCATGGCCCTCAAAGCGTGTTGCAGTGGATCCTCTTGTTTCTTCTGAAGCTTCTCAATGTGTTCTGCCTCAGGTGGATCAGTTGGGGCAGGCACATAGCACCATGTCTCAGAATGCTATTTCGTTGCCACCAGTTCCTGGTAGGGAGTACAGTGTAGAAGGGAGCACTGATCCACAAAACCATATTTTGTTTGGTGTGAATATAGAAAACTCTTCTTCGCTACTAATGCATCATGGAATGTCAAGCCTTAAGGGGGTTGGCAGCAACACTCATTCATCAACCGTACCTATTCAATCTTCTAATTACCTGAATACAGTAGGCACTGATTCTTCACTGAATCAAGGAATGACACACAGCAATGGTGAATCGGGCTTCCTTCAGCCTCCAGAAGATGGGGGCCGAGGAAACCCGCCAAATAAAAAGACCTTTGTGAAGGTTTATAAATCAGGGACCTTTGGAAGATCATTGGATATAACTAGATTTACCAACTACCATGAGCTGCGCAGCGAGCTTGCTCGTATGTTCGGCCTTGAAGGTGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTAGTTGTGGACCGAGAGAATGACGTTCTTCTCCTCGGTGATGACCCATGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCGGGAGGTGCAGCAAATGGCCAACAATGGCATCTGTGATGACTTACCAGGACATGATGACCCAAGAAATTTAGACTTCTGA 2640 0.4606 MKLSSADFCPPPPEGEKRVLDSELWHACAGPLVSLPIVGSRVVYFPQGHSEQVAVSTNREVDAQIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSDFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFYGMKEDDFGINSSLMWLRDADRGLQSLNFQGTGVSPWMQPRLDPSMLNLQTDLYQAMAATALQDMRTLDPTKQHPTSLIQFQQPQNFPNRTGALMQTPMLQPSQHQQAFPNNQEIQHPSQSQVQIQNHLQQHLQNQHLFNNQSHQQQQPQLQQQQQQQHHQQQMVDHQEIPNVVSTMSQFVSTPQSQSLPMQAISSLCHQQSFTDSNGTAAVSPLHSILGSFPQDETSHLVNLARTSSWVPVQSSSAWPSKRVAVDPLVSSEASQCVLPQVDQLGQAHSTMSQNAISLPPVPGREYSVEGSTDPQNHILFGVNIENSSSLLMHHGMSSLKGVGSNTHSSTVPIQSSNYLNTVGTDSSLNQGMTHSNGESGFLQPPEDGGRGNPPNKKTFVKVYKSGTFGRSLDITRFTNYHELRSELARMFGLEGELEDPLRSGWQLVVVDRENDVLLLGDDPWPEFVNSVWCIKILSPREVQQMANNGICDDLPGHDDPRNLDF 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04914 879 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 864 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip03g04914 879 MobiDBLite consensus disorder prediction 485 510 - -
Aip03g04914 879 SMART B3_2 127 229 IPR003340 GO:0003677
Aip03g04914 879 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Aip03g04914 879 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Aip03g04914 879 Pfam AUX/IAA family 768 860 IPR033389 -
Aip03g04914 879 Gene3D - 125 228 IPR015300 -
Aip03g04914 879 MobiDBLite consensus disorder prediction 742 768 - -
Aip03g04914 879 Gene3D - 768 860 - -
Aip03g04914 879 MobiDBLite consensus disorder prediction 525 549 - -
Aip03g04914 879 Gene3D - 291 363 - -
Aip03g04914 879 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip03g04914 879 CDD B3_DNA 126 227 IPR003340 GO:0003677
Aip03g04914 879 PANTHER AUXIN RESPONSE FACTOR 1 864 - -
Aip03g04914 879 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Aip03g04914 879 ProSiteProfiles PB1 domain profile. 771 855 IPR000270 GO:0005515
Aip03g04914 879 SUPERFAMILY CAD & PB1 domains 767 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04914 Aip-Chr3 133662865 133668771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04914 1 483 B3 DNA Binding Superfamily AT1G30330 84.426 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip03g04914 AUX_IAA 1.6e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04914 - - gmx:100777789 1419.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04914 03 133662865 133668771 Aip03g04914 03 133662865 133668771 ECH
Aip10g01210 10 18179880 18185833 Aip03g04914 03 133662865 133668771 PCT