Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04912 ATGAATCAAAAGCAGCTTGAGCCACTACCTTTGCTAAGCAGCTTCCTTGGTTCTTCAACTTGTTCATCATCAGAACAAAATCAAAATCTGAAAGAAGATGTGACAGTGGCCTTGCACATTGGGCTCCCTGACAATTCCCATGATAATCATAATGTAGAACCTCTCCAAGCTCCAAATAATTACTGGATACCAACTGAAGAACAGATTATAATTGGTTTCAGCCACTTCTCTTGTCCTGTATGCCCAAAAACCTTCAACCGCTACAACAATCTTCAGATGCATATGTGGGGACATGGGTCAGAATACAGAAGAGGGCCAGAGTCACTGAAAAGAACACATCCAAGGCCATTGTTGGAGATAGCATGCTACTGCTGCAAAGGAGGGTGCAAGAACAACATAGAGCACCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACACTGCAAACACACTATAAGAGGAAGCATGGACCCAAACCCTTCTCATGCCGCAAGTGTTCAAAGAATCTCGCTGTCAAAGGTGACTGGAGAACTCATGAGAAGAACTGCGGCAAACGCTGGCTTTGTCTTTGTGGCTCTGACTTCAAACACAAGAGGTCTCTTAAGGATCATATCAAAGCTTTTGGCTTTGGTCATACTCCCTTCTCTTCTTCTTCTACTTCTTCTTCTCATTGA 672 0.4375 MNQKQLEPLPLLSSFLGSSTCSSSEQNQNLKEDVTVALHIGLPDNSHDNHNVEPLQAPNNYWIPTEEQIIIGFSHFSCPVCPKTFNRYNNLQMHMWGHGSEYRRGPESLKRTHPRPLLEIACYCCKGGCKNNIEHPRAKPLKDFRTLQTHYKRKHGPKPFSCRKCSKNLAVKGDWRTHEKNCGKRWLCLCGSDFKHKRSLKDHIKAFGFGHTPFSSSSTSSSH 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04912 223 PANTHER ZINC FINGER PROTEIN WIP2 5 219 IPR043584 GO:0003700|GO:0010468
Aip03g04912 223 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 5 219 - -
Aip03g04912 223 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Aip03g04912 223 SUPERFAMILY beta-beta-alpha zinc fingers 71 99 IPR036236 -
Aip03g04912 223 Pfam Zinc finger, C2H2 type 76 95 IPR013087 -
Aip03g04912 223 Gene3D Classic Zinc Finger 75 98 - -
Aip03g04912 223 SUPERFAMILY beta-beta-alpha zinc fingers 142 180 IPR036236 -
Aip03g04912 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04912 Aip-Chr3 133647530 133648266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04912 1 217 C2H2 Transcription Factor Family AT1G34790 56.400 2.16e-95 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g04912 zf-C2H2 0.00024 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04912 - - gmx:547675 369.392