Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04908 ATGACGTCACGTAGCGGCGGCAGCAGCAGCCGTGCTGGTGGCGGGACGAAGGTGGGGAAATACGAGATGGGTCGGACACTTGGAGAGGGAAACTTCGCAAAGGTGAAGTTCGCCAGGAACTTGGAGACAGGGGAGAACGTGGCCATCAAGATCCTTGACAAAGAGAAAGTTCTCAAGCACAAGATGATAAACCAGATAAAACGAGAAATATCCACAATGAAACTGGTTAGACACCCCAATATCATACGTTTGCATGAGGTGATGGCTAGCAAGACAAAGATATACATTGTGTTGGAACTTGTGACCGGCGGGGAACTGTTTGATAAAATTGCAAGCCAAGGGAGGCTGAAAGAAGACGAAGCAAGGAAATATTTTCAGCAGCTTATATGTGCTGTTGATTACTGTCACAGTAGAGGTGTTTGCCACAGAGACTTGAAGCCTGAGAATTTGTTGCTGGGTGCTGATGGAGGGCTTAAAGTGTCAGATTTTGGATTGAGTGCACTGCCTCAACAAGTTCGAGAAGATGGGCTGCTTCACACAACATGTGGTACGCCAAATTATGTTGCCCCAGAGGTGATAAAAAATAAAGGCTATGATGGTGCAAAGGCTGATCTCTGGTCATGTGGTGTTATTCTCTTTGTTTTAATGGCTGGTTATTTGCCCTTTGAAGACAACAACCTTATGAATTTATATAAAAAGATTTTCAATGCTCAGTACGATTGTCCTCCATGGTTTTCTTCAAGTGCCAAAAAACTAATCAAGAAAATCCTCGATCCCAATCCTGCTACGCGGATTACAATTCCTGAGTTAATTGAGAATGAGTGGTTCAAGAAGGGGTACAAGCCTCCTCGATTTGAGCAGGAAGATGTCAGTCTTGATGATATAAATGCTATATTCAGTGAAGCAATGGATGCACACAATCTTGTTGTGGAAAGGCGAGAAGAGGAGTCAGTGGCTCCTGTGACTATGAATGCATTTGAGCTTATCTCTACATCCCAGGGCCTCAACCTCAGAAATCTTTTCCAGAAGCAGATGGGACTTGTTAAAAGGGAGACAAGATTCACATCCAAATGTTCAGCAAATGAGATAATCTCAAAAATTGAGCAGGCTGCAGGTCCTCTGGGTTTTGATGTTAAGAAGAACAACACTAAGTTGAAGATTCAAGGGGAAAAAAGTGGACGAAAAGGTCATCTAGCAGTAGCAACTGAGATCTTGGAGGTGGCCCCTCAACTTAACATGGTTGAGCTTCGAAAATGTGGAGGAGACACATTGGAATTTCACAAGTTCTATAAGAATCTATCTGTTGGCCTGAAAGACATCATTTGGAAAGCAGAACCTATTGATGAAGATTTGGATGCAGATACAGGTACAGGAAAAGGTGCAGCTAGTAATTCTAAATAA 1401 0.4311 MTSRSGGSSSRAGGGTKVGKYEMGRTLGEGNFAKVKFARNLETGENVAIKILDKEKVLKHKMINQIKREISTMKLVRHPNIIRLHEVMASKTKIYIVLELVTGGELFDKIASQGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLGADGGLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIKNKGYDGAKADLWSCGVILFVLMAGYLPFEDNNLMNLYKKIFNAQYDCPPWFSSSAKKLIKKILDPNPATRITIPELIENEWFKKGYKPPRFEQEDVSLDDINAIFSEAMDAHNLVVERREEESVAPVTMNAFELISTSQGLNLRNLFQKQMGLVKRETRFTSKCSANEIISKIEQAAGPLGFDVKKNNTKLKIQGEKSGRKGHLAVATEILEVAPQLNMVELRKCGGDTLEFHKFYKNLSVGLKDIIWKAEPIDEDLDADTGTGKGAASNSK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04908 466 Pfam NAF domain 320 380 IPR004041 GO:0007165
Aip03g04908 466 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Aip03g04908 466 ProSiteProfiles NAF domain profile. 318 342 IPR018451 GO:0007165
Aip03g04908 466 CDD STKc_SnRK3 20 275 - -
Aip03g04908 466 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04908 466 MobiDBLite consensus disorder prediction 1 20 - -
Aip03g04908 466 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Aip03g04908 466 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 15 448 - -
Aip03g04908 466 SUPERFAMILY Protein kinase-like (PK-like) 18 292 IPR011009 -
Aip03g04908 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Aip03g04908 466 Gene3D Transferase(Phosphotransferase) domain 1 101 283 - -
Aip03g04908 466 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04908 466 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04908 466 PANTHER SERINE/THREONINE KINASE 15 448 - -
Aip03g04908 466 Gene3D Kinase associated domain 1, KA1 318 443 - -
Aip03g04908 466 CDD CIPK_C 324 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04908 Aip-Chr3 133605935 133610967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04908 16 450 CBL-interacting serine-threonine protein kinases AT1G01140 68.934 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aip03g04908 Pkinase 1.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04908 - - adu:107482008 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04908 03 133605935 133610967 Aip03g04908 03 133605935 133610967 ECH