Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04906 ATGGATCATATCAATACCACCAAAGGCTTCACTCTTGAGCATCTTCAATATCTTGTGGTTGATGAAACGGACCGGCTACTCCGTGAGGCCTACCAGTCATGGCTACCTGCTGTGCTTGAATCGGTGCAGTTGAATGAGGATAACACTTTTGAACCCAGTGATTCGTTTTTACCTTGTTCCATGGGTGTGTTAACAACCAGAAGAAGATGTGGAGTTGAGAGGGGTTTCAAGGATAAGCCCTACCCTAGGCTGGCAAAGATTGTCCTGTCTGCGACAATAACTCAGGACCCAGGCAGGCTTGTTCAGCTTGAGTTGCATCACCCTTTATTCCTGAGAGCTGGGCCAATGCGTTATCGACTCCCAGAAAATCTGCAATCCTTCAAATTGATCTGTGAAAGAAAGGTCAAACCCTTGTACTTGGTTGCCCTTTTAAAATCACTAGAAGGAGAAAAATGCATAATTTTTACAAAATCTGTGGAATCTACACATCGTCTCTGCAAATTGCTTAATTGTTTCGGAGATCTGCAAATTGATATCAAGGAGTACTCTGGTCTTCAACATCAACGTGTAAGAAGTAAGACCCTGAATAATTTTCGGAAAGGCGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTGGAAGGGGTAAGAAATGTCATTAACTATGACATGCCCAAATACGTGAAGACCTATGTTCATCGGGCTGGTAGGACTGCTCGAGCTGGCCATACTGGGCGCTGTTTCACATTGATGTCCAATGATGAGGTACGACAATTTAAGAAGTTGATGCAAAAGGCTGAGGCTAGTTCTTGTCCCGAGCACATCATTCAATCCAGTTTGATTGAAGCACTTCACCCTACCTATGAATCAGCATTGAAAAAATTCAAGGAGAAGATTTCGAAGGCACGAAAGAAGGCAAATGATTAG 942 0.4331 MDHINTTKGFTLEHLQYLVVDETDRLLREAYQSWLPAVLESVQLNEDNTFEPSDSFLPCSMGVLTTRRRCGVERGFKDKPYPRLAKIVLSATITQDPGRLVQLELHHPLFLRAGPMRYRLPENLQSFKLICERKVKPLYLVALLKSLEGEKCIIFTKSVESTHRLCKLLNCFGDLQIDIKEYSGLQHQRVRSKTLNNFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYVKTYVHRAGRTARAGHTGRCFTLMSNDEVRQFKKLMQKAEASSCPEHIIQSSLIEALHPTYESALKKFKEKISKARKKAND 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04906 313 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 111 IPR014001 -
Aip03g04906 313 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 1 297 - -
Aip03g04906 313 Pfam DEAD/DEAH box helicase 2 97 IPR011545 GO:0003676|GO:0005524
Aip03g04906 313 Gene3D - 1 114 IPR027417 -
Aip03g04906 313 PANTHER RNA HELICASE 1 297 - -
Aip03g04906 313 SMART helicmild6 163 247 IPR001650 -
Aip03g04906 313 Gene3D - 124 313 IPR027417 -
Aip03g04906 313 CDD SF2_C_DEAD 125 255 - -
Aip03g04906 313 Pfam Helicase conserved C-terminal domain 136 247 IPR001650 -
Aip03g04906 313 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 269 IPR027417 -
Aip03g04906 313 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 139 297 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04906 Aip-Chr3 133574026 133580136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04906 72 269 Eukaryotic Initiation Factors Gene Family AT3G19760 25.854 9.94e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04906 K14807 - vvi:100258315 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04906 03 133574026 133580136 Aip03g04906 03 133574026 133580136 ECH