Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04898 ATGGAGGAGGAGGATGAGATCCAACCACAGGCGTGTAAGTTCCCCAGGCTCGCTAATGGCAGGACCGACCCCACCAACAACGCCAAGATAGGAGCAGCCTGGCACCATTCCTCCAGGATCATAAGGGTTTCTAGAGCTTCCGGCGGCAAAGATCGCCATAGCAAGGTAATGACCTCTAAGGGCCTGAGAGACAGAAGGGTCAGGCTCTCCGTCACCACCGCCATTCAGTTTTATGACCTCCAAGACCGATTGGGCTATGACCAGCCCAGCAAGGCCGTGGAGTGGCTCATCAAGTCTGCTCAAGACGCCATTGCCGAGCTTCCATCCTTGAACACCACCTTCCCTGAAACCCCGAAGCAACCGAGCGATGAGAAGAGGGGCGGTGCAGGCGCCGACGATGCGGACATAGACATAGAGGAGCAGCAGAAGCAGAAGCAGAACAGCCAGAATATGTCACTTTCGAAGTCGGCTTGCAGCAGCACCTCAGAGACGAGCAAGGGGTCCGGGTTGTCCCTGTCTCGGTCCGATATCCGCGTGAAAGCGAGGGAGAGGGCAAGGGAGAGAGCGGCCAAGGAGAAGAAGAAAGACAAGTGCAACAATAATCAGCATCAGAATAACCTTGTTCATCATCAGCAACAGCAACAGCATCAGCAGCAGCATCACAACATGAACCCAATTTCTCCTTCGTTTACTGAGCTACTCACAGGTGGCATCACCACTGCGGTTCCAACAACAACTAGTCCTACTTCTGATGAGCCTGCTGCTGCTCTCTTCCACAAAGCGGCAAGGCAACAACAACAGCAGCAGCAGCAGCAGCAATGGGGTTCAGCACCCATGGATTACTTCAACCAGGTTCTCGTAGGCCCCTCTTCATCTTCAAGAACCCATCAACACCAACACCAGATCCAACTGGGACATCATACCCTAGCTGAGGCCATATCCTTTAATAATGATCAGCAGCAGCAGCAGCAGCACCACTACTCCTTCATCCCTGATCAGTTCATGCCAGCTGTGGTTACATCCTCTCACTCTCATAACCATCATCACAGTGCTGGCGACACTGATTACAACCTCAACTTCACCATTTCTCCGGCTTCTGTATCTGCTTCTGCCTCTGGCCTTGCTGCTTACAACAACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCACATTTCTTGCCTCACCTCCAGAGGTTCTCGCTGCCTATGGACGGATCCACTGTTCCTTTCTTCATTGGAGCTGCCGCACCCACCGCTGCTCCGCCTCCTCCCATCGACAACCACCAACACCATCAGGCAAATCCAAGAACTCATGACCTTCCGGCCACTACCCTGGACTCGGAAGGTCGAGTACGAGGAGCAAGGCGTGCGTGCCTCAGAGCCTGCCTTCACCAAAATGGATGA 1404 0.537 MEEEDEIQPQACKFPRLANGRTDPTNNAKIGAAWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAQDAIAELPSLNTTFPETPKQPSDEKRGGAGADDADIDIEEQQKQKQNSQNMSLSKSACSSTSETSKGSGLSLSRSDIRVKARERARERAAKEKKKDKCNNNQHQNNLVHHQQQQQHQQQHHNMNPISPSFTELLTGGITTAVPTTTSPTSDEPAAALFHKAARQQQQQQQQQQWGSAPMDYFNQVLVGPSSSSRTHQHQHQIQLGHHTLAEAISFNNDQQQQQQHHYSFIPDQFMPAVVTSSHSHNHHHSAGDTDYNLNFTISPASVSASASGLAAYNNNRGTLQSNSPSHFLPHLQRFSLPMDGSTVPFFIGAAAPTAAPPPPIDNHQHHQANPRTHDLPATTLDSEGRVRGARRACLRACLHQNG 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04898 467 PANTHER TRANSCRIPTION FACTOR TCP24 1 436 - -
Aip03g04898 467 Coils Coil 186 206 - -
Aip03g04898 467 MobiDBLite consensus disorder prediction 119 142 - -
Aip03g04898 467 MobiDBLite consensus disorder prediction 176 200 - -
Aip03g04898 467 MobiDBLite consensus disorder prediction 207 226 - -
Aip03g04898 467 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 436 IPR005333 GO:0003700
Aip03g04898 467 Coils Coil 131 151 - -
Aip03g04898 467 Pfam TCP family transcription factor 48 195 IPR017887 -
Aip03g04898 467 ProSiteProfiles R domain profile. 175 193 IPR017888 -
Aip03g04898 467 MobiDBLite consensus disorder prediction 143 172 - -
Aip03g04898 467 MobiDBLite consensus disorder prediction 419 444 - -
Aip03g04898 467 MobiDBLite consensus disorder prediction 109 201 - -
Aip03g04898 467 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04898 Aip-Chr3 133419314 133424123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04898 34 431 TCP Transcription Factor Family AT4G18390 40.732 2.48e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aip03g04898 TCP 5.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04898 - - lang:109362619 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04898 03 133419314 133424123 Aip03g04898 03 133419314 133424123 ECH