Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04855 ATGTTCTTCGCTGTCGCCTCCTCCTCACTCTGCATTCTCTGGCGCTGGTTTGATAGAAGTAACCTGATTCATGAGGATGAAAAGCTTCTCAGGCATATCATTAAGTACGGTCATGGATGTTGGAGCTCTGTTCCTAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGTTGCAGACTTAGGTTGGGGTGGGGGCTAGCTGGCTTATCAGAATCTATTGACAACAAGGCTTCATTTCAAGGACCTCAGCCTTAG 252 0.4762 MFFAVASSSLCILWRWFDRSNLIHEDEKLLRHIIKYGHGCWSSVPKQAGLQRCGKSCRLRLGWGLAGLSESIDNKASFQGPQP 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04855 83 Pfam Myb-like DNA-binding domain 25 60 IPR001005 -
Aip03g04855 83 Gene3D - 23 63 - -
Aip03g04855 83 PANTHER MYB16 PROTEIN 25 60 - -
Aip03g04855 83 SUPERFAMILY Homeodomain-like 24 60 IPR009057 -
Aip03g04855 83 ProSiteProfiles Myb-like domain profile. 25 60 IPR001005 -
Aip03g04855 83 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 61 IPR017930 -
Aip03g04855 83 CDD SANT 25 60 IPR001005 -
Aip03g04855 83 PANTHER MYB DOMAIN PROTEIN 55 25 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04855 Aip-Chr3 132793474 132794494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04855 25 60 MYB Transcription Factor Family AT4G01680 94.444 3.94e-19 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip03g04855 Myb_DNA-binding 9.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04855 K09422 - adu:110278510 116.316