Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04823 ATGGTTGCTCAACACCCTCAGCCTCAGCCTCAGCCACAGCCACAGCAACCTCCTTCGTCTGCACAAGACGAGGCTTTGAAGAGGAACACCGATTGCGTCTACTTTCTCGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCTCGGGTAAATCCTAGAGATTGCTGGTATTGGTTGAATGGAAATTGCTTGAACCCCAAATGTGCTTTCCGTCATCCGCCACTTGATGGCTTGTTAGGTTCACCGGCAGCCACTGCTGCTGGGCCATCTGTTCCCTCGTCACAGATTCCAGCGACGCCTGCAGCACCTGCAGCGCCTTATAATTCTACTAAACAAGCTGTCCCTTGTATTTTCTTTCAGAAGGGTCTTTGCTTAAAAGGTGACAGATGTGCTTTCTTGCATGGGCCAAATCCTACTGCTGGTAACAAAGCTGTTAATCAGGTCCCAGTGTCTAACCAGGGAACTGAGACTCCAAGTCTTAAGAAGCCATTTGGCAGCAGAGATAAAAATGCACAAGAAAGGAGAAGCTCCCAAGGAAACATTCCAAAATTAGTTGGAGGTCTTGAAATTAAACCTTCCCTAAAGGTCGAAACTGCTCCACAAAGAAATAATTTTGAATTGGTGAAGGAGAAGCATGTGGCACCACCACCTGCAGGATTTGATGATGAGGCTTCAAGATTTAAAATGAGAAGTATTTCCCCAGTGGCTAACGGGCCTACTGCTGCCCGTTCAAATCGACTGCATCAAGTCCGTATGCCAGATGATAATAGTTTCCACAATGGTAAGGACAGTGATGAATTCCTCAGAGAATCCTCTCCTGGATTCGATGTTCTTGTGGCTGACGAGCTTAGAAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAATGCAAGAGGTCCAGATGAAAGGAACTTGGATTCTTTGAATGATTATGACTTGGGGCATTCTGCTGATTATGGTTTAGCGCGTGATATTGATCAAGAAAGATTTCGTGTTCCTCAATCCTACGACTCATATGATCACATGCAGGAGCCATACGCTTGGGAGCAGCATAGAAAGGCCCCGGGCCATTTAGAAAGGAGGTCTCACCGCAGATCTGATAGTCCTGACAATGTAGAGGTCTCAGATCTCCGACATCGTTTATCTAAGCGCAGGAGGGTTAACGGTTTGAAATCTGTTGTCTCTAATGACTTTGACAGCCATGGTGATCAACAAAGTCACCAGTTCTCCTCTAGGAAGGATTCGCATCAGTTACCTTTGAATGATCGCTTCCGAGGCAGAATAAAACTTCCAGCAAGTGGTGCCGATGATAACCCAGAGAGGGAATCAGACAGAGGAAGAATTAGGAGCAGATTGTCAACTGGAAGGTTGCCAACCCCGCACCAAGGAAGGCTCCAAGACAGAATTAAAGGAAGGGTGCAGGATGATGAGAGGAGAAATTTCAGGGAACGATCAATAGGGAGAGAAGCAATGGGGGACAGAAGTGATTTTTCCGGACCTAAAAGCCTTGCTGAACTTAAGAATGGGAGGAGCTCTGAGTATAAGGAGCATCAATCACTGGGAAAGAGGAAGAGTCTAAGGGAACAGTCACAATCAGAAGGTGATTTTCAGTTTGATGGTCCAAAACCTCTGAGTGAAATTCTGAAGGAGAAGAGAAGAGTTGGAGCTGGTGTATCCTCACAGAGTGAAATTGTTCATAGCTCTGATGATACAGCTGTCACAAACACGCAAAATGGAGCATTGCCTGAGGCCAAGGAAGGTGCCAAGAACCACTCACTAATTAATGAAGAAGAAACCAAGCTTCAGGACACTGATACAGCTGGAAGGGAGATAGATAATAATGAGGGAAATCGTGATCAGTCGTATGAGGATGGAATGATCTATGATGAAGCTGCAGAGGAACAGGAGTATGAAGGCGATGATCAGAGGGATGGAGAGTATGATTATGAGCAAGTTGACGAGGGGGAATATGATTATGAACAAGTTGATGAGGGAGAAAATCCAGAGCAAGAATACATGGAGGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTGATGACTACATAA 2100 0.4533 MVAQHPQPQPQPQPQQPPSSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCAFRHPPLDGLLGSPAATAAGPSVPSSQIPATPAAPAAPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPTAGNKAVNQVPVSNQGTETPSLKKPFGSRDKNAQERRSSQGNIPKLVGGLEIKPSLKVETAPQRNNFELVKEKHVAPPPAGFDDEASRFKMRSISPVANGPTAARSNRLHQVRMPDDNSFHNGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGNARGPDERNLDSLNDYDLGHSADYGLARDIDQERFRVPQSYDSYDHMQEPYAWEQHRKAPGHLERRSHRRSDSPDNVEVSDLRHRLSKRRRVNGLKSVVSNDFDSHGDQQSHQFSSRKDSHQLPLNDRFRGRIKLPASGADDNPERESDRGRIRSRLSTGRLPTPHQGRLQDRIKGRVQDDERRNFRERSIGREAMGDRSDFSGPKSLAELKNGRSSEYKEHQSLGKRKSLREQSQSEGDFQFDGPKPLSEILKEKRRVGAGVSSQSEIVHSSDDTAVTNTQNGALPEAKEGAKNHSLINEEETKLQDTDTAGREIDNNEGNRDQSYEDGMIYDEAAEEQEYEGDDQRDGEYDYEQVDEGEYDYEQVDEGENPEQEYMEDEDGDDFAKKIGVMTT 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04823 699 MobiDBLite consensus disorder prediction 361 389 - -
Aip03g04823 699 ProSiteProfiles Zinc finger C3H1-type profile. 118 145 IPR000571 GO:0046872
Aip03g04823 699 MobiDBLite consensus disorder prediction 149 168 - -
Aip03g04823 699 SUPERFAMILY CCCH zinc finger 119 143 IPR036855 GO:0046872
Aip03g04823 699 MobiDBLite consensus disorder prediction 472 504 - -
Aip03g04823 699 SMART c3hfinal6 59 82 IPR000571 GO:0046872
Aip03g04823 699 SMART c3hfinal6 27 54 IPR000571 GO:0046872
Aip03g04823 699 SMART c3hfinal6 118 144 IPR000571 GO:0046872
Aip03g04823 699 MobiDBLite consensus disorder prediction 635 685 - -
Aip03g04823 699 MobiDBLite consensus disorder prediction 415 432 - -
Aip03g04823 699 MobiDBLite consensus disorder prediction 443 460 - -
Aip03g04823 699 MobiDBLite consensus disorder prediction 402 699 - -
Aip03g04823 699 MobiDBLite consensus disorder prediction 1 24 - -
Aip03g04823 699 ProSiteProfiles Zinc finger C3H1-type profile. 26 55 IPR000571 GO:0046872
Aip03g04823 699 Pfam Zinc-finger containing family 27 81 IPR041686 -
Aip03g04823 699 ProSiteProfiles Zinc finger C3H1-type profile. 57 83 IPR000571 GO:0046872
Aip03g04823 699 MobiDBLite consensus disorder prediction 569 590 - -
Aip03g04823 699 MobiDBLite consensus disorder prediction 93 113 - -
Aip03g04823 699 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 11 698 - -
Aip03g04823 699 Gene3D - 18 83 - -
Aip03g04823 699 Gene3D - 112 176 - -
Aip03g04823 699 MobiDBLite consensus disorder prediction 598 634 - -
Aip03g04823 699 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 11 698 - -
Aip03g04823 699 MobiDBLite consensus disorder prediction 149 192 - -
Aip03g04823 699 MobiDBLite consensus disorder prediction 517 539 - -
Aip03g04823 699 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 144 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04823 Aip-Chr3 132491555 132495275 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip03g04823 zf-CCCH_3 7.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04823 - - gmx:100787836 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04823 03 132491555 132495275 Aip03g04823 03 132491555 132495275 ECH