Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04809 ATGAGGAGGGTTTCAAGTGCTGTGATGATCCTCTTGTGGTTGTTTTCTTCCACCATGATCATAGGAAACTCATCATCATTGCACAGTGAAACCACTCTCAGAGTGCTTTTGGAAGTGAAGAAATCTTTCCAGCAAGACCCAGAAAACGTTCTGAGTGATTGGTCAGAGGAAAACAAAGATTATTGCAGTTGGAGAGGAGTAACATGCGGATCATCCATTAACTCTAACTCGGAATTGCAAGTGGTGAGTCTCAACCTTTCTGACTCGTCGCTCACCGGGTCAATATCACACTCACTCGCTCTCTTACGAAACCTGCACCACCTTGATCTCTCTTCCAACAACCTCAACGGTCCCATTCCACCTAATCTCTCTAACCTCACTTCATTGGAATCTTTGCTTCTCTTCTCTAACCAACTCACAGGTCATGTCCCCACTGAGTTGGGCTTGCTCACCAGTCTCCGAGTCATGCGACTCGGTGACAACGAACTAACGGGCANNNNNNNNNCGCAACTCGGCCAACTCAGCAATATGGAGAATCTGATACTTAAGGACAACGAGTTAATGGGACCGATTCCGGCCGAGTTGGGAAACTGCACGAGCCTCACTGTCTTCACCGCAGCTAACAACAAGCTCAACGGGTCAATCCCGAGTGAACTGAGTCAACTCAAGACCCTTCAGATTCTCAACCTCGCCAACAACACCTTGTCAGGGGAGATACCGAGTCAACTCGGGGAGATGAGTGATCTCGTTTACCTCAATTTCATGGGGAACCAACTCGAGGGTGCTATTCCACCATCGTTATCTCAACTGGGGAACCTTCAAACTCTCGACTTGTCAATGAACAAGCTCAGTGGCGGAATCCCAGAAGAATTGGGGAACATGCGTGAGCTATCTTTTTTGGTTCTTTCTGGCAACAACAATCTTAGTGGTGTCATTCCAACAAACATATGTTCCAACGCAACAAAGTTGGAGCATATGTTTCTGTCTGATATTGGAATTCATGGTGAGATTCCATCTTCATTGGGCCAATGCCAGTCACTGAAACAACTTGACTTGTCCAACAACTCACTCAATGGGTCCATTCCCATTGAAATTTATGGATTGCTGTGGTTAACTGATCTCTTGCTCCACAACAACACGTTGGTTGGTTCAGTTTCTCCCTCAATTGGAAACCTCAGTAGCTTGCAGATACTTGCATTGTTCCACAACAATTTGCAGGGTCCTCTGCCTGAAGAGATTGGGATGCTTCGGGAGTTGGAAATCTTGTATCTTTATGATAATCAATTGTCAGGGGATATACCCATGGAGATTGGGAACTGTTCCAGCTTGCAAATGATTGATCTCTATGGGAATCATTTCAGTGGTGAAATTCCAAAATCCATTGGAAGGCTGAAAAAATTGAATTTCCTTCACCTAAGGCAGAATGACCTTGTTGGTGAAATTCCTGCCACACTTGGTAACTGTCATAAGCTGAATATTCTGGATTTAGCAGATAATCAACTCTCAGGTGGAATCCCTGCAACACTTGGATACCTCAAGTCATTGGAACAGTTGATGCTCTACAACAATTCTCTTGAAGGTAACCTCCCTCACCAACTCACAAATGTAGCAAACTTGACCAGAGTGAATCTTTCTAAGAACAGACTGAATGGTAGTATGACTGCATTGTGTAGCTCTAGATCGTTTCTTTCCTTCGATGTCACGAACAATGCCTTTGATGGTGAAATTCCTCCCCAATTAGGAAATTCACCCTCACTTGAGAGGCTAAGATTAGGTAACAATAGATTTTCTGGTGAAGTTCCAAGGACATTGGGAAAGATCCATGAGTTGACACTGTTAGACCTCTCAGGGAATGCACTCACTGGACCAATACCGGATGAGCTCTCTTTATGCAACAGACTGTCTCAAATTCATTTACACAATAATTCTATGTCTGGCCAAATACCAACTTGGGTTGGAAGTTTGCCTCAGCTTGGGGAGCTTACCCTTTCCTTCAATAATTTTTCTGGACCAATTCCATTAGGCTTATTCAGATGTTCCAAATTGCTGGTTCTTGACCTGAATGACAATTCTCTCAATGCTAGTCTCCCAGCTGAAGTTGGTGATCTTGCATCCCTTACCGTTCTCAGACTTGGCCGTAATAAGTTATCTGGACCGATCCCTGCAGCAATAGGCAAGTTGAGCAAGCTTTATGAGCTGCAGCTATCTAATAATAGCTTCAATGGTGAGATTCCAACAGAAATTGGAAAACTCCAAAATCTCCAGACCAGTTTAGACCTCGGTTACAACAATCTCTCAGGTGAAATCCCAGCTTCTCTTGGGAATCTGTTGAAATTGGAAGCACTTGATCTTTCCCACAATCAACTCACTGGAGAAGTCCCTCCACAAGTTGGTGACATGAGCAGTTTGGGAGTGCTTGATCTCTCCTACAACAACCTTCAAGGAAAATTGGACAGGAAATTCTCTCATTGGCCAGACGAGGCATTTGAAGGGAACCAACAGCTTTGTGGAAGCCCTCTTGATCACTGCAACAGTGATGATGCTTCCAGCAGAGATCAATCAGGCCTAAATGCACCATCAGTAGTGGTAATATCTGCCATTTCAACTCTAGCCGCAGTTGCGCTATTTATACTTGCATTCAGAGCCTTCTTCAGAAACAAACCAGAACATCTTAAGAGAGACAGTGAAGCGAATTATGTGTACTCCTCCTCTTCATCACAAGCACAGCGAAGGCCGCTGTTTCAACTCAACCCTGCTGGAAATCGAGATTTCAGGTGGGAAGATATCATGGATGCAACAAACAATCTAAGCGATGAATTCAAGATTGGTTCAGGGGGGTCAGGGACAATCTACAAAGCTGAATTGGCCAATGGAGATACAGTGGCTGTCAAGAAGATTTCAGCGAAAGATGATTTTCTGTTGAACAAAAGCTTCATAAGAGAAGTTAAGACACTTGGGAGGACAAGGCACAGGCATCTTGTGAAGCTTATAGGTTACTGTGGCAATAATGCAAACAAAGGAGCAGCTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTATGGGATTGGCTTCATGGGAAGCCAGCTACGGCCAGCAAAGTGAAGAGGAGCCTTGATTGGGAGACAAGGTTCAGAATTGCAGTGGGACTAGCTCAAGGAGTGGAGTACCTCCACCATGATTGTGTGCCAAAGATCATTCACAGGGATATCAAATCCAGCAACATATTGCTAGATTCCAAAATGGAAGCACACTTGGGAGATTTTGGACTTGCAAAAGCAATCTTCGAGAATTATGACTCCAGAACCGAGTCTAATTCTCTGTTTGCAGGATCTTACGGCTACATGGCTCCAGAGTACGCATACTCCCTACGTGCAACAGAAAAGAGTGATGTTTACAGCATGGGAATTGTGCTTATGGAGCTTGTTAGTGGTAAAACACCAACAGATGAAACTTTTGGAGCAGAGATGGATATGGTGAGATGGGTGGAGATGCACATGGATATGCATGGCGCTGCACGCGAGGAGGTGATAGATCCTGAGCTGAAACCTCTGTTGCCTGCTGAAGAGTTTGCGGCATTCCAAGTGCTTGAGGTAGCATTGCAGTGCACCAAAACTACACCACAGGAGAGGCCATCCTCCCGGAAAGTATGTGATCTTCTCCTCCATGTATTCAACAACAGGATGGCCCAGTTTGATAAGATGAATTTGGATCAGTACAAATTCAAGTGA 3738 0.4444 MRRVSSAVMILLWLFSSTMIIGNSSSLHSETTLRVLLEVKKSFQQDPENVLSDWSEENKDYCSWRGVTCGSSINSNSELQVVSLNLSDSSLTGSISHSLALLRNLHHLDLSSNNLNGPIPPNLSNLTSLESLLLFSNQLTGHVPTELGLLTSLRVMRLGDNELTGXXXXQLGQLSNMENLILKDNELMGPIPAELGNCTSLTVFTAANNKLNGSIPSELSQLKTLQILNLANNTLSGEIPSQLGEMSDLVYLNFMGNQLEGAIPPSLSQLGNLQTLDLSMNKLSGGIPEELGNMRELSFLVLSGNNNLSGVIPTNICSNATKLEHMFLSDIGIHGEIPSSLGQCQSLKQLDLSNNSLNGSIPIEIYGLLWLTDLLLHNNTLVGSVSPSIGNLSSLQILALFHNNLQGPLPEEIGMLRELEILYLYDNQLSGDIPMEIGNCSSLQMIDLYGNHFSGEIPKSIGRLKKLNFLHLRQNDLVGEIPATLGNCHKLNILDLADNQLSGGIPATLGYLKSLEQLMLYNNSLEGNLPHQLTNVANLTRVNLSKNRLNGSMTALCSSRSFLSFDVTNNAFDGEIPPQLGNSPSLERLRLGNNRFSGEVPRTLGKIHELTLLDLSGNALTGPIPDELSLCNRLSQIHLHNNSMSGQIPTWVGSLPQLGELTLSFNNFSGPIPLGLFRCSKLLVLDLNDNSLNASLPAEVGDLASLTVLRLGRNKLSGPIPAAIGKLSKLYELQLSNNSFNGEIPTEIGKLQNLQTSLDLGYNNLSGEIPASLGNLLKLEALDLSHNQLTGEVPPQVGDMSSLGVLDLSYNNLQGKLDRKFSHWPDEAFEGNQQLCGSPLDHCNSDDASSRDQSGLNAPSVVVISAISTLAAVALFILAFRAFFRNKPEHLKRDSEANYVYSSSSSQAQRRPLFQLNPAGNRDFRWEDIMDATNNLSDEFKIGSGGSGTIYKAELANGDTVAVKKISAKDDFLLNKSFIREVKTLGRTRHRHLVKLIGYCGNNANKGAAWNLLIYEYMENGSVWDWLHGKPATASKVKRSLDWETRFRIAVGLAQGVEYLHHDCVPKIIHRDIKSSNILLDSKMEAHLGDFGLAKAIFENYDSRTESNSLFAGSYGYMAPEYAYSLRATEKSDVYSMGIVLMELVSGKTPTDETFGAEMDMVRWVEMHMDMHGAAREEVIDPELKPLLPAEEFAAFQVLEVALQCTKTTPQERPSSRKVCDLLLHVFNNRMAQFDKMNLDQYKFK 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04809 1245 SUPERFAMILY RNI-like 558 815 - -
Aip03g04809 1245 PRINTS Leucine-rich repeat signature 347 360 - -
Aip03g04809 1245 PRINTS Leucine-rich repeat signature 776 789 - -
Aip03g04809 1245 Gene3D Ribonuclease Inhibitor 305 366 IPR032675 -
Aip03g04809 1245 Pfam Leucine rich repeat 729 789 IPR001611 GO:0005515
Aip03g04809 1245 SUPERFAMILY L domain-like 32 313 - -
Aip03g04809 1245 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 4 177 - -
Aip03g04809 1245 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 163 1240 - -
Aip03g04809 1245 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Aip03g04809 1245 Gene3D Ribonuclease Inhibitor 458 556 IPR032675 -
Aip03g04809 1245 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 4 177 - -
Aip03g04809 1245 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 163 1240 - -
Aip03g04809 1245 SUPERFAMILY Protein kinase-like (PK-like) 918 1223 IPR011009 -
Aip03g04809 1245 SUPERFAMILY L domain-like 318 645 - -
Aip03g04809 1245 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
Aip03g04809 1245 Gene3D Ribonuclease Inhibitor 557 852 IPR032675 -
Aip03g04809 1245 Pfam Leucine Rich Repeat 104 126 IPR001611 GO:0005515
Aip03g04809 1245 Pfam Protein kinase domain 940 1220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04809 1245 SMART serkin_6 936 1228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04809 1245 Gene3D Transferase(Phosphotransferase) domain 1 1018 1243 - -
Aip03g04809 1245 ProSitePatterns Protein kinases ATP-binding region signature. 942 965 IPR017441 GO:0005524
Aip03g04809 1245 ProSiteProfiles Leucine-rich repeat profile. 104 127 IPR001611 GO:0005515
Aip03g04809 1245 Gene3D Ribonuclease Inhibitor 367 457 IPR032675 -
Aip03g04809 1245 Gene3D Ribonuclease Inhibitor 193 290 IPR032675 -
Aip03g04809 1245 ProSiteProfiles Protein kinase domain profile. 936 1228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g04809 1245 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1068 1080 IPR008271 GO:0004672|GO:0006468
Aip03g04809 1245 SMART LRR_typ_2 512 536 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 703 727 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 344 368 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 655 679 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 102 125 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 607 631 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 751 775 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 776 799 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 270 294 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 126 150 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 800 831 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 222 246 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 416 440 IPR003591 -
Aip03g04809 1245 SMART LRR_typ_2 464 488 IPR003591 -
Aip03g04809 1245 Gene3D Phosphorylase Kinase; domain 1 896 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04809 Aip-Chr3 132381698 132385722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04809 613 827 Receptor kinase-like Gene Family AT5G56040 34.513 8.30e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aip03g04809 Pkinase 9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04809 - - gmx:100801889 1834.69