Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04796 ATGATTCAACCTCAAACCCATTTGAATGTAGCCGATAACAGCGGAGCCCGCCAATTGATGTGTATTCGAATCATAGGAGCAGGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCGGTACCAAATATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACAGTATGATGATAATGCCGCGGTTGTCATTGATCAAGAGGGAAATCCAAAAGGAACTCGAATTTTTGGCGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAGGTATTATAA 369 0.3902 MIQPQTHLNVADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04796 122 ProSitePatterns Ribosomal protein L14 signature. 60 86 IPR019972 -
Aip03g04796 122 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aip03g04796 122 PANTHER RIBOSOMAL PROTEIN L14B/L23E-RELATED 1 122 - -
Aip03g04796 122 SUPERFAMILY Ribosomal protein L14 1 122 IPR036853 GO:0003735|GO:0005840|GO:0006412
Aip03g04796 122 Hamap 50S ribosomal protein L14 [rplN]. 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aip03g04796 122 TIGRFAM rplN_bact: ribosomal protein uL14 1 122 IPR005745 GO:0003735|GO:0006412|GO:0015934
Aip03g04796 122 Pfam Ribosomal protein L14p/L23e 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aip03g04796 122 Gene3D Ribosomal protein L14 1 122 IPR036853 GO:0003735|GO:0005840|GO:0006412
Aip03g04796 122 SMART Ribosomal_L14_2 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04796 Aip-Chr3 132255265 132255633 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04796 8 118 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.522 4.53e-18 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04796 K02874 - csin:14412462 226.483