Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04792 ATGGCAAAACCTATACCCAAAATTGGTTCGCGTAAAAATGGACGTATTGGTTCACGTAAACATGCTCGTAAAATACCAAAGGGCGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTCACTGTTACCGATGTACGGGGTCGGGTAATTTCGTGGTCCTCCGCAGGTACTTGTGGATTCAAAGGTACGCGAAGGGGAACACCATTTGCCGCCCAAACCGCAGCAGGAAATGTTATTCGAACAGTAGCGAATCAAGGCATGCAACGAGCAGAAGTCATGATAAAGGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGCATACTCTTAAATTTTATACGGGATGTAACCCCTATGCCACATAATGGGTGTAGGTCCCCTAAAAAACGACGTGTGTAA 417 0.4532 MAKPIPKIGSRKNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNVIRTVANQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKRRV 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04792 138 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Aip03g04792 138 TIGRFAM uS11_bact: ribosomal protein uS11 19 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Aip03g04792 138 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Aip03g04792 138 SUPERFAMILY Translational machinery components 23 138 - -
Aip03g04792 138 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Aip03g04792 138 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 1 137 - -
Aip03g04792 138 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 7 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Aip03g04792 138 Gene3D Ribosomal protein S11 9 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
Aip03g04792 138 MobiDBLite consensus disorder prediction 1 23 - -
Aip03g04792 138 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04792 Aip-Chr3 132245345 132245761 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04792 28 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 38.182 6.68e-15 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04792 K02948 - gmx:3989330 263.077