LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g04789	ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTCAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGCCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAACTCGATTTTCGCCGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATCTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATTAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCCACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAACTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG	927	0.4369	MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKLDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKTLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK	308

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip03g04789	308	Hamap	50S ribosomal protein L2 [rplB].	1	307	IPR005880	GO:0003723\|GO:0003735\|GO:0006412\|GO:0015934\|GO:0016740
Aip03g04789	308	TIGRFAM	rplB_bact: ribosomal protein uL2	165	307	IPR005880	GO:0003723\|GO:0003735\|GO:0006412\|GO:0015934\|GO:0016740
Aip03g04789	308	MobiDBLite	consensus disorder prediction	1	25	-	-
Aip03g04789	308	Pfam	Ribosomal Proteins L2, RNA binding domain	40	116	IPR022666	GO:0003735\|GO:0005840\|GO:0006412
Aip03g04789	308	SUPERFAMILY	Nucleic acid-binding proteins	2	123	IPR012340	-
Aip03g04789	308	SMART	Ribosomal_L2_C_2	122	285	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
Aip03g04789	308	PANTHER	RIBOSOMAL PROTEIN L2	165	306	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
Aip03g04789	308	PANTHER	RIBOSOMAL PROTEIN L2	3	138	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
Aip03g04789	308	Pfam	Ribosomal Proteins L2, C-terminal domain	166	283	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
Aip03g04789	308	Gene3D	-	1	112	IPR012340	-
Aip03g04789	308	ProSitePatterns	Ribosomal protein L2 signature.	250	261	IPR022671	GO:0003735\|GO:0005840\|GO:0006412
Aip03g04789	308	Gene3D	-	116	227	IPR014722	-
Aip03g04789	308	Gene3D	Ribosomal protein L2, domain 3	228	307	IPR014726	-
Aip03g04789	308	MobiDBLite	consensus disorder prediction	258	308	-	-
Aip03g04789	308	SMART	Ribosomal_L2_2	40	116	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
Aip03g04789	308	PIRSF	RPL2p_RPL2a_RPL8e_RPL2o	163	308	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
Aip03g04789	308	PIRSF	RPL2p_RPL2a_RPL8e_RPL2o	13	138	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
Aip03g04789	308	SUPERFAMILY	Translation proteins SH3-like domain	166	305	IPR008991	-
Aip03g04789	308	PANTHER	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	3	138	-	-
Aip03g04789	308	PANTHER	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	165	306	-	-
Aip03g04789	308	MobiDBLite	consensus disorder prediction	292	308	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g04789	Aip-Chr3	132238282	132239775	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g04789	51	267	Cytoplasmic Ribosomal Protein Gene Family	AT3G51190	31.330	2.64e-23	94.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g04789	K02886		-	rcu:11542411	545.428