Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04784 ATGGCTTCTCCAATGGGGTCATCATCAACGGCTGGTGGTGCTACTGATGGTACTGATGATGAGGGGCAAAATCGTCCTCAAAATTCTCGAAGGTTTTACCATCGTCACACTCCCCATCAGATAGCAAAGCTTGAGGAAGCGTTCAACGCATGTGCACATCCAAATGATAGCATGCGGCGACAACTAGGCACAGAACTAGGGCTTGAACCCAGACAAGTCAAATTTTGGTTTCAGAATAGGAGGACCCAAGCAAAGGCTCAAGCTGATAGATCAAATAACTGTGCTCTTCGGCGAGAGAATGAGAGAATGATGGCAGAAAACTTGATGTTCAGAGAGTCCTTGAAGAATGTAGTTTGCGTAACTTGTGGTGGTCCAACCGTAACGGAGGATGATTGCCAAATTCGCTTGGAACAATTCAAGTTGGAAAATGATTTTCTTGTGCAAGAGTATAGGAAAATGGGAGAGCTTCTTGCAAGTTACAACATCATAGGTGCAGATCAAGTAGTGTCCCCTGTGCAATTATCATCAGTGTTATCTTCTCTGGCCAGCAGTGGTAGCATTACTACTCCTACTCCTACTCCTACTCCTACTCCTACCCCAACAGCTGCAATACCATGTTTGATTGATCCTCAGATTGAAACTTCTCTCTGCCAACGCTTCCATTCACTCTGCCGCCAAAACACTACTCCTACTCCTCCTCAAGGAGCTCAAAGTAGCAATAGTATTATTCGTCCTTTTAATGGCGATCGTGATCATCAAGATATGATTCCTGCTCAATCTGCTGCTGCTACTCCGAGTGCCGTCGCTGTTGCGGAGGTAGTGAGCTTCTTCACAGAGGAGGAGATAGTAAGAATGAAAGAGGCGGCGACTAAAGCCGTGGACGAAGTAGCGAGGCTTCTGCGGATGAACGAGCCTTTCTGGTTTAGGTCAACAGTTGATGGAAACTTCATTCTTCAGCGTCAAAGCTACGACGGCGTTTTCCACAATGTTGGGTTGAAGTGTGAAGCACGCAGAGAGGCATCAAAAGATTCACGAGTGGTGGCTATGAGCGGCAGGAAATTGGTTGATATGTTCTTAGATTCGGAAAAATGGGTTTCCATTTTCCCAACAATGGTTAAAAAAGCAGATACAATCGAAGTACTCAACACCGGTTTGCCACAGACCCGAAGTGGAGCCTTGCAACTGATGTATGCAGATATACATATTCTTTCACCGTTACTTAGATCTCGGGAATTCTTCTTCCTGCGGTACTGTGTGCAAGTTGATGTAGGTGCATGGATCATAGCAGATGTCTCATTTGATTCCTCCAGATTCCTTCATTCCCTCACTTGGAAGCTTCCCTCTGGATGCTTAATCCACGACATGAACGATGGATATTCCACCATTACTTGGGTGGAACATGTGGAAATAAGTGACAGTATCCAAACGAATCCGATTTTTAGAGACCTAGTTTGTAGCAACAGTGCATTTGGAGCAGAAAGATGGATTCTGACACTCGAAAGGATGTGCGAGAGAATTGCATTCGCCTCAATGAACATGATGCCTAGTTGTGACAGTGGAGTGATTGCTTCACCTGAAGGACGAAAGAACGTGATGGAATTTTCTGAGAGGATGGTAAAGCTCTTCTGTGGGTCTCTGGACATGTCAGGTAACATGGAGTTGCAATATGGGAAGAACAACAATGGTGTAAGAGTTGGTATTCGAAGAAGTATAGAGGCTGGTGTGCCTAAGGGCTTGATTGTCACTGCATCTATCTCCCTTTGGCTTCCTCTCTTGCCACAAGCACTCTTTAACTTTTTCAAAGATCCATCAACTAGACAACAGTGGGATGTTCTGTGCCATGGAAATCCAGTGACTCAGATTCAGCGCATCTCAAATGGAACTTTTTCTGATAACTTTACAACAATTCTTCGGCCTTATATTCCTACGGAGAACAACACGCTTCTTCTCCAAGAATGCTGCACGGATTTCTTGGGAAGCGTGGTGGTGTATGCTCCGGTTGATGTTGGCACAATAACTGCGGCAATCAACGGAGAGGACACCACCACGATGCCTATTCTCCCCTCCGGCTTCACCATATGCGGAGATGGATCTCCTCCGCGAGGAGCTTTCTTTGGCTGTGCGCTTCCAGAATCGAGACATTACGGTGGCTCCATACTAACGGTGACCGTACAGGTGCTAGTTAGTAACCAAAATGCGGTGGGGCAGTTCAACATGAACACCGTTGATGCTGTCAATGGACTCGCAGCCACCACTGTCAAGAAAATTAAAGCCGCCTTCAAATGTCCCTGA 2292 0.4599 MASPMGSSSTAGGATDGTDDEGQNRPQNSRRFYHRHTPHQIAKLEEAFNACAHPNDSMRRQLGTELGLEPRQVKFWFQNRRTQAKAQADRSNNCALRRENERMMAENLMFRESLKNVVCVTCGGPTVTEDDCQIRLEQFKLENDFLVQEYRKMGELLASYNIIGADQVVSPVQLSSVLSSLASSGSITTPTPTPTPTPTPTAAIPCLIDPQIETSLCQRFHSLCRQNTTPTPPQGAQSSNSIIRPFNGDRDHQDMIPAQSAAATPSAVAVAEVVSFFTEEEIVRMKEAATKAVDEVARLLRMNEPFWFRSTVDGNFILQRQSYDGVFHNVGLKCEARREASKDSRVVAMSGRKLVDMFLDSEKWVSIFPTMVKKADTIEVLNTGLPQTRSGALQLMYADIHILSPLLRSREFFFLRYCVQVDVGAWIIADVSFDSSRFLHSLTWKLPSGCLIHDMNDGYSTITWVEHVEISDSIQTNPIFRDLVCSNSAFGAERWILTLERMCERIAFASMNMMPSCDSGVIASPEGRKNVMEFSERMVKLFCGSLDMSGNMELQYGKNNNGVRVGIRRSIEAGVPKGLIVTASISLWLPLLPQALFNFFKDPSTRQQWDVLCHGNPVTQIQRISNGTFSDNFTTILRPYIPTENNTLLLQECCTDFLGSVVVYAPVDVGTITAAINGEDTTTMPILPSGFTICGDGSPPRGAFFGCALPESRHYGGSILTVTVQVLVSNQNAVGQFNMNTVDAVNGLAATTVKKIKAAFKCP 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04784 763 SUPERFAMILY Bet v1-like 279 506 - -
Aip03g04784 763 MobiDBLite consensus disorder prediction 1 30 - -
Aip03g04784 763 Gene3D - 286 484 IPR023393 -
Aip03g04784 763 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 761 IPR042160 -
Aip03g04784 763 CDD START_ArGLABRA2_like 283 504 - -
Aip03g04784 763 SMART HOX_1 29 91 IPR001356 GO:0003677
Aip03g04784 763 Pfam Homeodomain 30 85 IPR001356 GO:0003677
Aip03g04784 763 SUPERFAMILY Homeodomain-like 13 86 IPR009057 -
Aip03g04784 763 CDD homeodomain 30 87 IPR001356 GO:0003677
Aip03g04784 763 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 24 761 - -
Aip03g04784 763 SUPERFAMILY Bet v1-like 525 726 - -
Aip03g04784 763 MobiDBLite consensus disorder prediction 227 246 - -
Aip03g04784 763 Pfam START domain 290 505 IPR002913 GO:0008289
Aip03g04784 763 MobiDBLite consensus disorder prediction 227 253 - -
Aip03g04784 763 SMART START_1 287 505 IPR002913 GO:0008289
Aip03g04784 763 MobiDBLite consensus disorder prediction 1 22 - -
Aip03g04784 763 ProSiteProfiles START domain profile. 278 508 IPR002913 GO:0008289
Aip03g04784 763 Gene3D - 16 105 - -
Aip03g04784 763 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Aip03g04784 763 MobiDBLite consensus disorder prediction 183 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04784 Aip-Chr3 132115282 132123719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04784 33 763 Homeobox Transcription Factor Family AT1G17920 36.828 3.41e-158 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip03g04784 START 5.3e-26 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04784 K09338 - pvy:116104962 580.482