Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04774 ATGGCTTCCTTCACAATTGGTCCTCATCATCGCCATTTGTCACATGACTCTGATGAGGTTCGCCCTCCTACTCGACAATCTGCTTCATCGAAAGTACAATGCCGAGTTTGTGGTGATGAGATTGGAAATAAGGAAGATGGAGGGTTATTTGTGGCATGTTATGTGTGTGGCTTCCCTGTTTGTCGACCCTGCTATGAGTATGAGAGAAGTGAAGGCACACAGTGCTGTCCTCAGTGCAACACTCGCTATAAGCGTCACAAAGGATCTCCTAGAGTAGTAGGAGATGAAGAGGAGAACTTTGATGCAGATGATTTTGATGATGAATTTCAGATTAAGACTGGCCATGATCATGATCATGATCATGATGATGTTAATCATGCGGTAATGCATGCCTTTGATCATATTAAAAGATCATGCATGAGAATATTAATATGGCATTTGGTTTACTATTCTTTAGTTACCGGTAAAGACATTGAAGGGGACAAAGAATTCTACAGCAATGCAGAGTGGGAAGAAAGGGTAGAGAAATGGAAAGCCAGACAAGAAAAGAAAGGCCTCCTAAACAAAGAAGAAGGGAAAGACGATCAAGATGAAGAAGAAGATGAGTACCTTTTGGCTGAAGCTAGACAACCATTGTGGCGTAAAGTTCCAATATCTTCAAGCCTGATCAACCCATACCGGATAGTGATTGTGATGAGGCTGGTGATTCTGGCTTTCTTCTTGCACTTCCGCATCATGACTCCAGCACATGACGCTTTCCCACTGTGGTTAACATCTGTGATATGTGAGATATGGTTTGCATTCTCATGGATCCTTGACCAGTTCCCTAAATGGTTCCCCATCACGCGCGAGACTTACTTGGACCGCTTGTCCATAAGGTTCGAGCGCGAAGGGGAACCAAACAAGCTTTCCCCTGTTGATGTCTTTGTCAGTACTGTGGACCCTTTGAAGGAACCTCCAATCATAACAGCCAACACCGTCCTTTCCATCCTCTCCGTCGATTACCCGGTCGAAAAGGTTTCCTGCTATGTATCAGATGATGGTGCTTCTATGCTTCTCTTTGACACACTTTCGGAAACCTCTGAGTTTGCAAGAAGATGGGTTCCATTTTGCAAGAAGTATAATATTGAGCCAAGAGCTCCTGAGTTCTATTTCTCTCAGAAAATCGATTACTTGAAAGACAAGGTACATCCTATGTTTGTCAAGGAACGCAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTGAAGATTAATGCTTTGGTGGCAAAGGCTCAGAAGAAACCAGAGGAAGGTTGGGTAATGCAGGATGGAACACCATGGCCTGGGAATAACACTCGTGATCATCCAGGAATGATTCAGGTGTACTTGGGAAGTGCTGGTGCACTTGACGTGGAAGGCAAGGAACTGCCGCGACTTGTGTATATTTCGCGTGAAAAACGTCCTGGCTATCAACATCACAAAAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCTTTCATGTTGAATTTGGATTGTGACCACTACATAAACAATAGCAAGGCTATAAGAGAAGCTATGTGCTTCTTAATGGATCCTCAGCTTGGGAAGAAGCTCTGCTATGTCCAATTCCCACAAAGGTTCGATGGTATTGATCGACATGATAGATATGCCAATCGCAACATTGTATTCTTCGATATCAATATGAAAGGCCTAGATGGGATCCAAGGTCCAGTGTATGTTGGTACTGGAACTGTTTTCAATAGGCAGGCATTGTACGGATATGATCCACCAGTGTCCGAGAAAAGGCCAAAGATGACGTGTGATTGTTGGCCTTCCTGGTGCTGCTGCTGTTGTGGTGGTTCAAGGAAATCAAAGTCAAAGAAGAAATCAGGTGGAGGAGGTCTTTTCAGTAAATTGTACAAGAAGAAAAAGATGAAGGGGAAGAACTATGTTAGAAAAGGGTCTGAGCTGATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTTTGATGAGCTAGAGAAATCATCTCTAATGTCTCAGAAACAGTTTGAGAAGCGATTCGGGCAGTCGCCTGTTTTCATTGCTTCCACTTTGATGGAGAATGGTGGACTTCCTGAAGGCACTAATTCTCAAAATCTTATAAAGGAGGCCATTCATGTTATAAGTTGTGGTTATGAAGACAAAACCGAATGGGGAAAAGAGATTGGGTGGATTTATGGCTCAGTGACAGAAGATATCTTAACAGGGTTCAAAATGCACTGTAGAGGGTGGAAATCAGTGTACTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCACCAATAAATCTATCAGATAGGTTGCACCAAGTTTTGAGATGGGCTCTTGGTTCTGTTGAAATTTGCCTTAGTCGCCATTGTCCCCTGTGGTATGGCTATGGAGGAAAGCTTAAGTGGCTAGAAAGGATGGCTTATACCAACACCATAGTATATCCATTCACTTCCATTCCTCTCCTTGCATATTGCATACTACCAGCTGTGTGTCTTCTTACTGGAAAATTCATCATTCCCACCTTGACAAACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATATCCATCATCCTAACCGGTGTCCTTGAGCTTCGGTGGAGCGGAGTTAGCATCGAAGATTGGTGGCGAAACGAGCAATTTTGGGTGATTGGAGGAGTTTCGGCACACCTTTTTGCTGTGTTCCAAGGCCTCCTGAAAGTTCTTGGAGGAGTAGACACCAACTTCACAGTTACAGCAAAAGCAGCAGATGATACTGAGTTCGGAGAGTTATACCTTTTCAAGTGGACAACACTTCTGATCCCACCAACCACCCTCATAATATTGAACATGGTTGGGGTTGTGGCTGGTGTCTCTGATGCCATTAACAATGGATATGGCACATGGGGACCTTTATTTGGGAAGCTATTCTTTGCATTTTGGGTTATTGTTCACTTATATCCTTTCCTAAAGGGTCTCATGGGAAAGCAAAACAGGACTCCAACCATTGTGGTTTTATGGTCAATTCTGCTAGCATCCATTTTCTCATTGATTTGGCACTCAAATGTTGGCGGTGACAAAGGCGAGAAGGACTTCTCCGGGATGACGGGATACGGGATCACCATTGATCTCACCAGCAATTATAACGCGGTCACATATGTCGTGATTTTCTCAGCAGCCGTTGGTGTTGTTCTGAGAGGCCAAGACAACATTCTAACCGGGGTGCATTGCTATAACAAAGCATCATCTTTTGGTGGTGTGGGGACCTTGATGAATGGGTTGTTTCTTGGTGATGCTAATGTTTTGTTGATCAAGTTGTAG 3342 0.4366 MASFTIGPHHRHLSHDSDEVRPPTRQSASSKVQCRVCGDEIGNKEDGGLFVACYVCGFPVCRPCYEYERSEGTQCCPQCNTRYKRHKGSPRVVGDEEENFDADDFDDEFQIKTGHDHDHDHDDVNHAVMHAFDHIKRSCMRILIWHLVYYSLVTGKDIEGDKEFYSNAEWEERVEKWKARQEKKGLLNKEEGKDDQDEEEDEYLLAEARQPLWRKVPISSSLINPYRIVIVMRLVILAFFLHFRIMTPAHDAFPLWLTSVICEIWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNKLSPVDVFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNIEPRAPEFYFSQKIDYLKDKVHPMFVKERRAMKREYEEFKVKINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKSGGGGLFSKLYKKKKMKGKNYVRKGSELMFDLEEIEEGLEGFDELEKSSLMSQKQFEKRFGQSPVFIASTLMENGGLPEGTNSQNLIKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEICLSRHCPLWYGYGGKLKWLERMAYTNTIVYPFTSIPLLAYCILPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGTWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWHSNVGGDKGEKDFSGMTGYGITIDLTSNYNAVTYVVIFSAAVGVVLRGQDNILTGVHCYNKASSFGGVGTLMNGLFLGDANVLLIKL 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04774 1113 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 23 119 - -
Aip03g04774 1113 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 162 1026 - -
Aip03g04774 1113 Pfam Zinc-binding RING-finger 31 99 IPR027934 -
Aip03g04774 1113 CDD mRING-HC-C4C4_CesA_plant 34 82 - -
Aip03g04774 1113 SUPERFAMILY RING/U-box 28 100 - -
Aip03g04774 1113 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 414 598 IPR029044 -
Aip03g04774 1113 SUPERFAMILY Nucleotide-diphospho-sugar transferases 319 838 IPR029044 -
Aip03g04774 1113 MobiDBLite consensus disorder prediction 1 27 - -
Aip03g04774 1113 Pfam Cellulose synthase 306 1027 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aip03g04774 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Aip03g04774 1113 Coils Coil 404 424 - -
Aip03g04774 1113 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 23 119 - -
Aip03g04774 1113 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 162 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04774 Aip-Chr3 132023997 132029004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04774 2 1026 Cell Wall Biosynthesis AT5G17420 66.730 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04774 K10999 - gmx:100781996 1719.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04774 03 132023997 132029004 Aip03g04774 03 132023997 132029004 ECH