Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04754 ATGGCAGAAGCGGTGGGGCCTTCATCGCCGGCGGCTATCGCGGCAAATCGTCGACGCGTGACGAGCGCGCCGGAGAACATCGACTTCGAGACGACGGAGGGCGTAAAGGCTATCGTGAGTTTCGAGGAAATGGGGATCAAGGAGGAGCTCCTCCGCGGGATCTACCAGTACGGCTTCGAGAAGCCCTCGGCCATTCAGCAACGCGCTGTCATGCCAATCATCCAGGGTCGTGACGTCATCGCCCAGGCCCAGTCGGGCACCGGCAAGACCTCCATGATCGCCCTCACCGTCTGCCAGCGCGTCGAGACTTCCATTCGCGAGGTTCAGGCGTTGATATTGTCGCCGACGAGGGAGCTGGCGGCGCAGACGGAGAAGGTGATATTGGCGATTGGGGATTTCATAAACATTCAGGCGCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATGTGGTGTCTGGAACTCCTGGGCGGGTCTGTGACATGATCAAAAGGAGGACTTTGCGCACCAGAGATATCAAGATGCTGGTTCTGGATGAATCGGACGAGATGTTAAGCAGAGGGTTTAAGGATCAAATTTATGATGTGTATAGGTATCTGCCACCAGAGCTTCAGGTTGTCTTGATTTCTGCCACTCTCCCTCATGAAATACTGGAGATGACAAGTAAATTCATGACAGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACACTGGAGGGCATCAAGCAATTCTTTGTTGCAGTTGAACGGGAAGAATGGAAGTTTGATACTCTATGTGATCTTTATGATACCCTTACTATCACGCAGGCTGTTATATTTTGTAACACTAAGCGAAAGGTGGATTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTGTATCGGCAATGCATGGAGACATGCCGCAGAAAGAAAGAGATGCAATTATGGCAGAATTTCGTGCTGGAACTACTCGTGTGCTAATAACAACGGATGTCTGGGCACGTGGCCTTGATGTACAGCAGGTTTCTCTAGTCATCAACTATGACCTCCCAAATAATCGTGAGCTCTACATTCATCGAATAGGCCGCTCTGGGCGTTTTGGACGCAAGGGTGTTGCAATAAACTTTGTCAAGAGTGACGATATCAAGATTTTGAGAGATATTGAGCAATATTATAGTACTCAGATTGATGAAATGCCAATGAACGTGGCTGATCTTATATAA 1233 0.4672 MAEAVGPSSPAAIAANRRRVTSAPENIDFETTEGVKAIVSFEEMGIKEELLRGIYQYGFEKPSAIQQRAVMPIIQGRDVIAQAQSGTGKTSMIALTVCQRVETSIREVQALILSPTRELAAQTEKVILAIGDFINIQAHXXXXXXXXXXXXXXXXXHVVSGTPGRVCDMIKRRTLRTRDIKMLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSAMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04754 410 Pfam DEAD/DEAH box helicase 64 224 IPR011545 GO:0003676|GO:0005524
Aip03g04754 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Aip03g04754 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 67 IPR014014 GO:0003724
Aip03g04754 410 SMART helicmild6 290 371 IPR001650 -
Aip03g04754 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Aip03g04754 410 Gene3D - 29 245 IPR027417 -
Aip03g04754 410 CDD SF2_C_DEAD 250 380 - -
Aip03g04754 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 238 IPR014001 -
Aip03g04754 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 403 - -
Aip03g04754 410 Coils Coil 136 139 - -
Aip03g04754 410 Gene3D - 246 410 IPR027417 -
Aip03g04754 410 PANTHER BNAA01G25900D PROTEIN 26 403 - -
Aip03g04754 410 SMART ultradead3 58 253 IPR014001 -
Aip03g04754 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 393 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04754 Aip-Chr3 131851248 131854893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04754 29 410 Eukaryotic Initiation Factors Gene Family AT3G19760 84.115 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04754 K13025 - gmx:100795032 697.197