Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g04749 ATGGGAAGAGGCAGAGGAGTTGCGGCTCTGAAACCCACGGCGGAGGTAAACGAATTAGGGCCGATGCCAGTATTGAAGGAAGTTAGATACCGCGGCGCGAGGAAGAGACCGTGGGGAAGATTCGCCGCCGAAATCAGAGACTCGTTGAAGAAAGCAAGGGTTTGGCTCGGAACCTTCGATTCCGCCGAGGACGCCGCCGCAAGAACACTCTGGGGACCAAAAGCCAAGACCAATTTTTCTCGCCGCTCAGGATCCAGCCCTCGATGTAGAACTGCAGCTTCGCCAGCGCCACTTGCTGCGATGGGAGATTCAACCCCTCCGCTGCTGCTCCGCCATCCTGGATGGCAACTTCCTCCTCGAGCAAAGCCGTTTCCTTCATATGCATTTTTTTGTAAGTGGCTGATTCTTCATAAATTACACAATCTGGACTGGTTGAATGGTGAACTGAGCCTGTGA 456 0.5395 MGRGRGVAALKPTAEVNELGPMPVLKEVRYRGARKRPWGRFAAEIRDSLKKARVWLGTFDSAEDAAARTLWGPKAKTNFSRRSGSSPRCRTAASPAPLAAMGDSTPPLLLRHPGWQLPPRAKPFPSYAFFCKWLILHKLHNLDWLNGELSL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g04749 151 SUPERFAMILY DNA-binding domain 29 81 IPR016177 GO:0003677
Aip03g04749 151 MobiDBLite consensus disorder prediction 76 97 - -
Aip03g04749 151 SMART rav1_2 29 86 IPR001471 GO:0003700|GO:0006355
Aip03g04749 151 CDD AP2 29 79 IPR001471 GO:0003700|GO:0006355
Aip03g04749 151 Gene3D AP2/ERF domain 28 81 IPR036955 GO:0003700|GO:0006355
Aip03g04749 151 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 84 - -
Aip03g04749 151 ProSiteProfiles AP2/ERF domain profile. 29 66 IPR001471 GO:0003700|GO:0006355
Aip03g04749 151 Pfam AP2 domain 29 67 IPR001471 GO:0003700|GO:0006355
Aip03g04749 151 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Aip03g04749 151 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Aip03g04749 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 25 84 - -
Aip03g04749 151 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g04749 Aip-Chr3 131743288 131743743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g04749 1 79 AP2-EREBP Transcription Factor Family AT3G20310 63.529 1.13e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip03g04749 AP2 3.5e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g04749 K09286 - adu:110278551 112.849